View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10284_low_17 (Length: 229)
Name: NF10284_low_17
Description: NF10284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10284_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40033425 - 40033206
Alignment:
| Q |
1 |
caatgtgtaaatttgtgtaatggataaacttcctcatagatgatgatagggaagatagtttcttttcaaagtcaatggcttctagttttaaacgaaggaa |
100 |
Q |
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| T |
40033425 |
caatgtgtaaatttgtgtaatggataaactttctcatagatgatgatagggaagatagtttcttttcaaagtcaatggcttctagttttaaacgaaggaa |
40033326 |
T |
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| Q |
101 |
aagggtgaaaaacttcgatgttaaaggaattcaccagatttccctcaagtttagaccaagcagtattcctcaaacaagttctcttcagccgaataatgaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| |||||| |
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| T |
40033325 |
aagggtgaaaaacttcaatgttaaaggaattcaccagatttccctcaagtttagaccacg-agtattcctcaaacaagttcttctcagccg---aatgaa |
40033230 |
T |
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| Q |
201 |
ggc-tatatatctaaatgcgagtt |
223 |
Q |
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||| |||||||||||||||||||| |
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| T |
40033229 |
ggcttatatatctaaatgcgagtt |
40033206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 40038902 - 40038791
Alignment:
| Q |
39 |
gatgatgatagggaagatagtttcttttcaaagtcaatggcttctagttttaaacgaaggaaaagggtgaaaaacttcgatgttaaaggaattcaccaga |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||| | ||||||| |||| ||||||||||||||||||||| |
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| T |
40038902 |
gatgatgatagggaagatagtttcttttcaaagtcaatgactccaagttttaaacgaagaaaaggagtgaaaagcttcaatgttaaaggaattcaccaga |
40038803 |
T |
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| Q |
139 |
tttccctcaagt |
150 |
Q |
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|||||||||||| |
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| T |
40038802 |
tttccctcaagt |
40038791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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