View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10284_low_4 (Length: 363)

Name: NF10284_low_4
Description: NF10284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10284_low_4
NF10284_low_4
[»] chr8 (16 HSPs)
chr8 (19-320)||(6352598-6352905)
chr8 (19-302)||(6424336-6424601)
chr8 (184-299)||(7459418-7459533)
chr8 (184-297)||(6363421-6363534)
chr8 (19-101)||(6363628-6363710)
chr8 (183-300)||(6370314-6370431)
chr8 (184-304)||(6332158-6332278)
chr8 (160-254)||(6274828-6274922)
chr8 (184-301)||(6289273-6289390)
chr8 (18-67)||(6332470-6332519)
chr8 (19-69)||(6391469-6391519)
chr8 (184-304)||(6321656-6321773)
chr8 (18-59)||(6321904-6321945)
chr8 (19-71)||(7459642-7459694)
chr8 (18-67)||(6275027-6275076)
chr8 (18-67)||(6289514-6289563)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 6352905 - 6352598
Alignment:
Q  19 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgttac------acaaaaataa 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||   ||||||||||||||||||       | ||||||||    
T  6352905 gaatttgcaagggagatgattgctggggtgaacccacacatcatcaaaaaactttcggtaaagctaatagtttaactttgttaagaaattaaaaaaataa 6352806  T
Q  113 aactaagactaatttgtaaacattatgttatttttataattggtgacattattgcttgctacctttaattcaggagtttccaccaacgagcaagctagat 212  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||| |||||||||||||||| |||||||||||||    
T  6352805 aactaagactattttgtaaacattatgttatttttgtaattggtgacattattgcttgctaaatttaatacaggagtttccaccaaagagcaagctagat 6352706  T
Q  213 agccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcactgtagaacaggtaatgacatatttgatta 312  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |    
T  6352705 agccaaaaatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggtggggtcaccgtagaacaggtaatgacatatttgatca 6352606  T
Q  313 gttctatt 320  Q
    ||||||||    
T  6352605 gttctatt 6352598  T

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Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 6424601 - 6424336
Alignment:
Q  19 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgttacacaaaaataaaactaa 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||| | ||||||                     
T  6424601 gaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaactcacggtaaagttaatagtttagcattgtta----------------- 6424519  T
Q  119 gactaatttgtaaacattatgttatttttataattggtgacattattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaa 218  Q
     |||| |||||||||| |||||||||| |||||||||| |||||||||||||  ||  |||||||||||||| ||||  | |||||||||||||||||||    
T  6424518 -actattttgtaaacaatatgttatttctataattggtaacattattgcttgaaacaattaattcaggagttcccacataagagcaagctagatagccaa 6424420  T
Q  219 atatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcactgtagaacaggtaatgaca 302  Q
    | || ||| ||||| ||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||    
T  6424419 aaatatggagataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgaca 6424336  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 7459533 - 7459418
Alignment:
Q  184 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 283  Q
    ||||||||||||||| ||||||| |||||||| || ||| |||||||||||||||||| |||||||  ||  ||||||||||||||||||| ||||||||    
T  7459533 aggagtttccaccaaagagcaagttagatagcaaactatatggtgataataccagcacaataaccattgatcacttggagccaaacatgggaggggtcac 7459434  T
Q  284 tgtagaacaggtaatg 299  Q
     |||||||||||||||    
T  7459433 agtagaacaggtaatg 7459418  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 184 - 297
Target Start/End: Complemental strand, 6363534 - 6363421
Alignment:
Q  184 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 283  Q
    ||||||||||||||| ||||||| |||||| |||| | |||||| |||||||||||||||||||||||||| | ||| ||||||||||||  ||||||||    
T  6363534 aggagtttccaccaaagagcaagttagatacccaactctttggtaataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcac 6363435  T
Q  284 tgtagaacaggtaa 297  Q
     |||||||||||||    
T  6363434 ggtagaacaggtaa 6363421  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 6363710 - 6363628
Alignment:
Q  19 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgtta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||| ||||||| ||||||    
T  6363710 gaatttgcaagggagatgattgctggggtgaatccacacatcataaaaaaactcttggtaaagttaatggtttaacattgtta 6363628  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 300
Target Start/End: Complemental strand, 6370431 - 6370314
Alignment:
Q  183 caggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtca 282  Q
    |||||| |||||  || ||||||| |||||||  || | | |||||||||||||||||| |||||||||||| |||||||||||||||||   |||||||    
T  6370431 caggagcttccaagaaagagcaagttagatagtaaactctatggtgataataccagcacaataaccaaagaacacttggagccaaacatgaatggggtca 6370332  T
Q  283 ctgtagaacaggtaatga 300  Q
    | ||| || |||||||||    
T  6370331 cagtaaaagaggtaatga 6370314  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 6332278 - 6332158
Alignment:
Q  184 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 283  Q
    ||||||| ||||||| |||||||||||||| |||| | |  ||||||||||| ||||| |||||| ||||| | ||  ||| ||||||||  ||||||||    
T  6332278 aggagttcccaccaaagagcaagctagatacccaactctacggtgataatacgagcacaataaccgaagaacagttacagctaaacatggatggggtcac 6332179  T
Q  284 tgtagaacaggtaatgacata 304  Q
    ||||||| | |||||||||||    
T  6332178 tgtagaagaagtaatgacata 6332158  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 6274922 - 6274828
Alignment:
Q  160 attattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaa 254  Q
    ||||||||||| ||  ||||||  |||| |||||||||| ||||||||||||||| ||| | |  ||||||||||||||||| ||||||||||||    
T  6274922 attattgcttgatatatttaatgtaggaatttccaccaaagagcaagctagataggcaactctacggtgataataccagcacaataaccaaagaa 6274828  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 6289390 - 6289273
Alignment:
Q  184 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 283  Q
    ||||||| ||||||| |||||||||| ||||||||   |  ||||||||||| ||||| |||||||||||| | ||| ||| ||| ||||  ||||||||    
T  6289390 aggagttcccaccaaagagcaagctaaatagccaagactacggtgataatacgagcacaataaccaaagaacagttgcagctaaatatggatggggtcac 6289291  T
Q  284 tgtagaacaggtaatgac 301  Q
    ||||||| | ||||||||    
T  6289290 tgtagaagaagtaatgac 6289273  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 6332519 - 6332470
Alignment:
Q  18 agaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaa 67  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  6332519 agaatttgcaagggagatgattgctggtgtgaatccacacataatcaaaa 6332470  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 6391519 - 6391469
Alignment:
Q  19 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaa 69  Q
    |||||||||||||||||||||||||| ||||||||| || |||||||||||    
T  6391519 gaatttgcaagggagatgattgctggtgtgaatccaaacgtcatcaaaaaa 6391469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 6321773 - 6321656
Alignment:
Q  184 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 283  Q
    ||||||| ||||||| |||||||||| ||| || | |||  ||||||||||| ||||| |||||| ||||| | || |||| ||||||||  ||||||||    
T  6321773 aggagttcccaccaaagagcaagctaaata-ccgattat--ggtgataatacgagcacaataaccgaagaacagttagagctaaacatggatggggtcac 6321677  T
Q  284 tgtagaacaggtaatgacata 304  Q
    ||||||| | |||||||||||    
T  6321676 tgtagaagaagtaatgacata 6321656  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 6321945 - 6321904
Alignment:
Q  18 agaatttgcaagggagatgattgctggggtgaatccacacat 59  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  6321945 agaatttgcaagggagatgattgctggtgtgaatccacacat 6321904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 7459694 - 7459642
Alignment:
Q  19 gaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaaaact 71  Q
    ||||| |||||| |||||||||||||||||||||| || ||||||||||||||    
T  7459694 gaattcgcaaggcagatgattgctggggtgaatcctcatatcatcaaaaaact 7459642  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 6275076 - 6275027
Alignment:
Q  18 agaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaa 67  Q
    ||||||| |||| |||||||||||||| || |||||||||||||||||||    
T  6275076 agaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaa 6275027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 6289563 - 6289514
Alignment:
Q  18 agaatttgcaagggagatgattgctggggtgaatccacacatcatcaaaa 67  Q
    ||||||| |||| |||||||||||||| |||||||||||||| |||||||    
T  6289563 agaatttacaagagagatgattgctggtgtgaatccacacattatcaaaa 6289514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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