View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10284_low_6 (Length: 357)
Name: NF10284_low_6
Description: NF10284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10284_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 10389403 - 10389071
Alignment:
| Q |
9 |
agcataggtaccagtaattgtgctactttgaccagctgctaataaaccaataccccaaatatatagaattggaaagaaccctccaccatatttttcttca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10389403 |
agcataggtaccagtaattgtgctactttgaccagctgctaataaaccaataccccaaatataaagaattggaaagaaccctccaccatatttttcttca |
10389304 |
T |
|
| Q |
109 |
agatattgtcctgcatttactaatcctatgtctttggcttgttcagtatcatagaatactctagcaaaaacggttatcacaaataggtttattactaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10389303 |
agatattgtcctgcatttactaatcctatgtctttggcttgttcagtatcatagaatactctagcaaaaacggttatcacaaatagatttattactaagg |
10389204 |
T |
|
| Q |
209 |
tgattaaaagtgctattgaggactcaattgagtagtaatttagagcctcttgaacttggcctttgttacggatgtcaatgtctcttgattgtactaatgc |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10389203 |
tgattaatagtgctattgaggactcaattgagtagtaatttagagcctcttgaacttggcctttgttacggatgtcaatgtctcttgattgtactaatgc |
10389104 |
T |
|
| Q |
309 |
tgaatgaagaaatacattatgtggagttataac |
341 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
10389103 |
tgaatgaagaaacacattatgtggagttataac |
10389071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 5803453 - 5803524
Alignment:
| Q |
9 |
agcataggtaccagtaattgtgctactttgaccagctgctaataaaccaataccccaaatatatagaattgg |
80 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| || ||||| |
|
|
| T |
5803453 |
agcatatgtaccagtaatagtgctactttgaccagctgctaataacccaataccccatatatacaggattgg |
5803524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 47292215 - 47292086
Alignment:
| Q |
9 |
agcataggtaccagtaattgtgctactttgaccagctgctaataaaccaataccccaaatatatagaattggaaagaaccctccaccatatttttcttca |
108 |
Q |
| |
|
|||||| || ||||| || ||||||||||| || || || | ||| ||||| ||||| ||||| ||||| || |||| ||||| |||||||| || ||| |
|
|
| T |
47292215 |
agcatatgtgccagtgatagtgctactttgtccggccgccagtaacccaattccccatatataaagaatagggaagagtcctcctccatatttctcctca |
47292116 |
T |
|
| Q |
109 |
agatattgtcctgcatttactaatcctatg |
138 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
47292115 |
agatattgccctgcatttactaatcctatg |
47292086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 39674078 - 39674016
Alignment:
| Q |
9 |
agcataggtaccagtaattgtgctactttgaccagctgctaataaaccaataccccaaatata |
71 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
39674078 |
agcataagtaccagttatagtgctactttgaccagctgctaacaacccaataccccatatata |
39674016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University