View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10284_low_7 (Length: 357)
Name: NF10284_low_7
Description: NF10284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10284_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 54969487 - 54969113
Alignment:
| Q |
1 |
ttacatatgtgctaattgaattaactgcagggagtacaagaggctgatagatcatcagaagggttttacatccgttccggcatcactgttgtattgaaaa |
100 |
Q |
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| T |
54969487 |
ttacatatgtgataattgaattaactgcagggagtacaagaggctgatagatcatcagaagggttttacatccgttccggcatcactgttgtattgaaaa |
54969388 |
T |
|
| Q |
101 |
attcaacaattgaagacgggctcgtcatataacaaactcacccatcatttgtttgaacgagtttaccatggatttgaggannnnnnnnnnnnnnnnnatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
54969387 |
attcaacaattgaagacgggctcgtcatataacaaactcacccatcatttgtttgaacgagtttaccatggattagaggatttttgtttttgtttttatg |
54969288 |
T |
|
| Q |
201 |
aattg------taaaaataaaaacacaatggatataaatagattggcatatcatcca-------------------ctatcttaacatctcataaaaatt |
275 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54969287 |
aattgtaaaaataaaaataaaaacacaatggatataaatagattggcatatcatccatcttatattccaattctgtctatcttaacatctcataaaaatt |
54969188 |
T |
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| Q |
276 |
attgactcaattacacttttaacacactaaaaaatattacatttatgttatacttgaattgcaatctctctgctt |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54969187 |
attgactcaattacacttttaacacactaaaaaatattacatttatgttatacttgaattgcaatctctctgctt |
54969113 |
T |
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