View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10285_high_9 (Length: 240)
Name: NF10285_high_9
Description: NF10285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10285_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 29140946 - 29140708
Alignment:
| Q |
1 |
aatcacttttaatcaaaatcaattttcttcacca------------cacactattttagagtatcatgtgttgcctaacaagaaaaagtttttactccat |
88 |
Q |
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| T |
29140946 |
aatcacttttaatcaaaatcaattttcttcaccagacactcaaacacacactattttagagtatcatgtgttgcctaacatgaaaaagtttttactctat |
29140847 |
T |
|
| Q |
89 |
taagcatctctttatattttcttcttaaaggtgtttgggatatatccagtggcacagcc--aacaatagttttatgcagggaccatatttgtacaatata |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
29140846 |
taagcatctctttatattttcttcttaaaggtgtttgggatatatccagtggcacagccaaaacaatagttttatggagggaccatatttgtacaatata |
29140747 |
T |
|
| Q |
187 |
tacatatattttcattaaatacttgcttatatataaagt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29140746 |
tacatatattttcattaaatacttgcttatatataaagt |
29140708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 21373161 - 21373202
Alignment:
| Q |
169 |
ccatatttgtacaatatatacatatattttcattaaatactt |
210 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21373161 |
ccatatttttacaatatatacatatattttcattaaatactt |
21373202 |
T |
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