View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10285_low_1 (Length: 517)
Name: NF10285_low_1
Description: NF10285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10285_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Original strand, 2489787 - 2490255
Alignment:
| Q |
17 |
agaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttgg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489787 |
agaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttgg |
2489886 |
T |
|
| Q |
117 |
ggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattcttgtcctcgctgcaacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489887 |
ggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattcttgtcctcgctgcaacc |
2489986 |
T |
|
| Q |
217 |
aataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctctactagttctacatgtacaatgaattttttgtgctctttctta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2489987 |
aataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctctactagttcgacatgtacaatgaattttttgtgctctttctta |
2490086 |
T |
|
| Q |
317 |
gtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctttgctattagttcaaattcatgtggacctgttttcaaaacccgttag |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2490087 |
gtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctttgctattagttcaaattcatgtggacctgttttcaaaacccattag |
2490186 |
T |
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| Q |
417 |
tttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtactgttagcattcatac |
485 |
Q |
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| T |
2490187 |
tttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtactgttagcattcatac |
2490255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 41591199 - 41590948
Alignment:
| Q |
17 |
agaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttgg |
116 |
Q |
| |
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||||||| || |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
41591199 |
agaatgttcgcgctttattcacacttgcatccaaagtctccccaactattatatttgtcgatgaggttgatagcatgcttgggcaacgaacaagagttgg |
41591100 |
T |
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| Q |
117 |
ggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattcttgtcctcgctgcaacc |
216 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||| ||||||| || || || | ||| || || || || ||||| || || |||||| |
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| T |
41591099 |
ggagcatgaagccatgcggaaaataaagaatgaatttatgtcccattgggacgggctcacgacaaaacaaggagagcgcatccttgttcttgcagcaacc |
41591000 |
T |
|
| Q |
217 |
aataggccctttgacttggatgaagcaattattagacgatttgaaagaaggt |
268 |
Q |
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|||||||| ||||||||||||||||| ||||| || ||||||||||| |||| |
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|
| T |
41590999 |
aataggccatttgacttggatgaagctattataaggcgatttgaaaggaggt |
41590948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 11094598 - 11094442
Alignment:
| Q |
17 |
agaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttgg |
116 |
Q |
| |
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|||||||||||||||| ||||| || ||||| ||||| | || ||||||||||| |||||||| |||||||| ||||| || ||||| || ||||| || |
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| T |
11094598 |
agaatgtccgagctttgttcacgctagcagctaaggttgctccgactattatattcgtcgatgaagttgacagcatgctcggtcagcgtactagagtcgg |
11094499 |
T |
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| Q |
117 |
ggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggact |
173 |
Q |
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|||||||| |||||| |||| || || |||||||||||| | ||||||||||||| |
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| T |
11094498 |
agaacatgaggccatgaggaagattaaaaatgaattcatgacacattgggatggact |
11094442 |
T |
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