View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10285_low_12 (Length: 254)
Name: NF10285_low_12
Description: NF10285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10285_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 44150363 - 44150126
Alignment:
| Q |
1 |
actaaaatcaaaaaataattgaagagaagaaaagtgtagtttagccacttgttcttcatcaaattttaatgtctcatacaaaagtactactagtacgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44150363 |
actaaaatcaaaaaataattgaagagaagaaaagtgtagtttagccacttgttcttcatcaaattttaatgtctcatacaaaagtactactagtacgaag |
44150264 |
T |
|
| Q |
101 |
tgcttcaactataaaattatcttgttgcaaatgatat-aaacctatttttctgtataacgcaggagagacagttttataacccacagagcattctgtgat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44150263 |
tgcttcaactataaaattatcttgttgcatatgatataaaacctatttttctgtataacgcaggagagacagttttataacccacagagcattctgtgat |
44150164 |
T |
|
| Q |
200 |
gcattaactgaagaaaacaacagagtaaaccaaggatt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44150163 |
gcattaactgaagaaaacaacagagtaaaccaaggatt |
44150126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 50786146 - 50786101
Alignment:
| Q |
159 |
gcaggagagacagttttataacccacagagcattctgtgatgcatt |
204 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
50786146 |
gcaggagagacagtttcataactcacagagccttctgtgatgcatt |
50786101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 36990462 - 36990524
Alignment:
| Q |
159 |
gcaggagagacagttttataacccacagagcattctgtgatgcattaactgaagaaaacaaca |
221 |
Q |
| |
|
|||| |||||||| || || |||||||||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
36990462 |
gcagaagagacagcttcattacccacagagcattctgtgacgcattggctgaagagaacaaca |
36990524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 42898914 - 42898964
Alignment:
| Q |
160 |
caggagagacagttttataacccacagagcattctgtgatgcattaactga |
210 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
42898914 |
caggagggacagtttcataactcacagagccttctgtgatgcattagctga |
42898964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University