View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10285_low_13 (Length: 253)
Name: NF10285_low_13
Description: NF10285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10285_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 812361 - 812586
Alignment:
| Q |
9 |
agtgagatgaatataaaatgaaatgaaatattagtttatatcacaaactaagagaatccgcaatgaatttggagttggtgcattaacttgtgtggcacat |
108 |
Q |
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| T |
812361 |
agtgaaatgaatataaaatgaaatgaaatagt--tttatttcacaaactaagagaatccacaatgaatttggagttggtgcattaacttgtgtggcacat |
812458 |
T |
|
| Q |
109 |
ttactactctcaactgtccgatttggtttaacggctgagatcatacagcttcactaaaactgatgtgtaatcttaacagtctaatctcaaattatcgatt |
208 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
812459 |
ttacttctctcaactgtccgatttggtttaacggctgagatcatacagcttcactaaaattgatgtgtaatcttaacagtctaatctcaaattatcgatt |
812558 |
T |
|
| Q |
209 |
aaagttaattacaatgtaaagtagtttg |
236 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
812559 |
aaaattaattacaatgtaaagtagtttg |
812586 |
T |
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