View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10285_low_2 (Length: 459)

Name: NF10285_low_2
Description: NF10285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10285_low_2
NF10285_low_2
[»] chr6 (5 HSPs)
chr6 (18-323)||(587178-587480)
chr6 (330-449)||(587517-587636)
chr6 (50-84)||(31434440-31434474)
chr6 (51-84)||(1008051-1008084)
chr6 (51-84)||(5258147-5258180)
[»] chr7 (5 HSPs)
chr7 (217-304)||(32057965-32058052)
chr7 (213-305)||(26799298-26799390)
chr7 (333-445)||(32057803-32057924)
chr7 (51-84)||(40630684-40630717)
chr7 (357-401)||(26799236-26799280)
[»] chr8 (1 HSPs)
chr8 (51-84)||(21121395-21121428)
[»] chr4 (2 HSPs)
chr4 (51-84)||(29399054-29399087)
chr4 (51-84)||(32633405-32633438)
[»] chr1 (5 HSPs)
chr1 (51-84)||(4001454-4001487)
chr1 (51-84)||(4318844-4318877)
chr1 (51-84)||(7133301-7133334)
chr1 (51-84)||(37311754-37311787)
chr1 (51-84)||(41165532-41165565)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 587178 - 587480
Alignment:
Q  18 aaattgtggttcctagaagttagatttaattcaaacaacaacaaccaagacttttcccactaagtggttgcttcatcatgaccgtctcatgacgaattgc 117  Q
    ||||||||||| |||||||||   ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  587178 aaattgtggtttctagaagtt---tttaattcaaataacaacaaccaagactttttccactaagtggctgcttcatcatgaccgtctcatgacgaattgc 587274  T
Q  118 aggctgaactatatgcggattggacatccttattgttatcattgtggagatgttgaaaatatgttgcatgtctttcgagaatattgtccgcttgcggtat 217  Q
    ||  ||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  587275 agattgaactatatgccaattggacatccttattgttatcattgttgagatgttgaaaatatattgcatgtctttcgagaatgttgtccgcttgcggtat 587374  T
Q  218 atggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaacatggagttgggcatgaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  587375 atggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaacatggagttgggcatgaat 587474  T
Q  318 gataca 323  Q
    ||||||    
T  587475 gataca 587480  T

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Target: chr6; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 330 - 449
Target Start/End: Original strand, 587517 - 587636
Alignment:
Q  330 tgtcatgccttgtggtcttggagaaacagttgagtcatgatagtgaagctacaatgcctcttaactcttggaacaaggagggttaattgttacatggaca 429  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  587517 tgtcatgccttgtggtcttggagaaacagttgagtcatcatagtgaagctacaatgcctcttaactcttggaacaaggagggttaattgttacatggaca 587616  T
Q  430 atcaatataatcatcctatg 449  Q
    ||||||||||||||||||||    
T  587617 atcaatataatcatcctatg 587636  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 31434440 - 31434474
Alignment:
Q  50 aaacaacaacaaccaagacttttcccactaagtgg 84  Q
    ||||||||||||||||||||| |||||||||||||    
T  31434440 aaacaacaacaaccaagacttatcccactaagtgg 31434474  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 1008051 - 1008084
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  1008051 aacaacaacaaccaagccttttcccactaagtgg 1008084  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 5258147 - 5258180
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||||||| |||||||||||||    
T  5258147 aacaacaacaaccaagacttatcccactaagtgg 5258180  T

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Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 32058052 - 32057965
Alignment:
Q  217 tatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaacatgga 304  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||    
T  32058052 tatggttgaatacagttattattaatcaaagagagaacttttttgaagcagatttgcagcattggattggcttaaatatgaacatgga 32057965  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 26799390 - 26799298
Alignment:
Q  213 ggtatatggttgaatacaattaggattaatcaaagagagaacttttttgaagcaaatttgcagaattggattgacttaaatatgaacatggag 305  Q
    |||||||||||||||||| || | ||| |||||||| ||| ||||||||||||| |||||||| ||||||||||||||||| ||| |||||||    
T  26799390 ggtatatggttgaatacagttggtatttatcaaagaaagagcttttttgaagcatatttgcagcattggattgacttaaatttgagcatggag 26799298  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 32057924 - 32057803
Alignment:
Q  333 catgccttgtggtcttggagaaac-agttgagtcatgatagtgaagctacaatgcctcttaactcttgga--------acaaggagggttaattgttaca 423  Q
    |||||||||||||  ||||||||| |||||||| |||||||| ||||||| ||| |||||||||| ||||        |||| ||||||||||||||| |    
T  32057924 catgccttgtggttatggagaaacaagttgagttatgatagtaaagctacgatgtctcttaactcatggaaggagattacaacgagggttaattgttaga 32057825  T
Q  424 tggacaatcaatataatcatcc 445  Q
    ||||| ||||||||| ||||||    
T  32057824 tggactatcaatatattcatcc 32057803  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 40630717 - 40630684
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  40630717 aacaacaacaaccaagccttttcccactaagtgg 40630684  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 26799280 - 26799236
Alignment:
Q  357 agttgagtcatgatagtgaagctacaatgcctcttaactcttgga 401  Q
    ||||||||||||||||| ||||||  |||||||||||||| ||||    
T  26799280 agttgagtcatgatagtcaagctatgatgcctcttaactcgtgga 26799236  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 21121428 - 21121395
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  21121428 aacaacaacaaccaagccttttcccactaagtgg 21121395  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 29399087 - 29399054
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  29399087 aacaacaacaaccaagccttttcccactaagtgg 29399054  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 32633405 - 32633438
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  32633405 aacaacaacaaccaagccttttcccactaagtgg 32633438  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 4001454 - 4001487
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  4001454 aacaacaacaaccaagccttttcccactaagtgg 4001487  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 4318844 - 4318877
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  4318844 aacaacaacaaccaagccttttcccactaagtgg 4318877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 7133301 - 7133334
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  7133301 aacaacaacaaccaagccttttcccactaagtgg 7133334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 37311754 - 37311787
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  37311754 aacaacaacaaccaagccttttcccactaagtgg 37311787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 41165565 - 41165532
Alignment:
Q  51 aacaacaacaaccaagacttttcccactaagtgg 84  Q
    |||||||||||||||| |||||||||||||||||    
T  41165565 aacaacaacaaccaagccttttcccactaagtgg 41165532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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