View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10285_low_6 (Length: 285)
Name: NF10285_low_6
Description: NF10285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10285_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 57 - 213
Target Start/End: Original strand, 47762397 - 47762550
Alignment:
| Q |
57 |
caatatatgagaacaaataagaaagtcagaataaactaatactaagttataaacataagaatatagtatttagacattattccaaaaaccaacacaattt |
156 |
Q |
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| T |
47762397 |
caatatatgagaacaaataagaaagtcagaataaactactactaagttataaacataagaatata---tttagacattattccaaaaaccaacacaattt |
47762493 |
T |
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| Q |
157 |
tgtctcagtaaccttcacttaagcataaattactacgaaattacaaattagcctcag |
213 |
Q |
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| T |
47762494 |
tgtctcagtaaccttcacttaagcataaattactacgaaattacaaatttgcctcag |
47762550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 47762293 - 47762339
Alignment:
| Q |
13 |
gcatagggggtcattaagggatagattgttaacacagtcacacacaa |
59 |
Q |
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| T |
47762293 |
gcatagggggtcattaagggatagattgttaacactgtcacacacaa |
47762339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 47762548 - 47762588
Alignment:
| Q |
229 |
cagctcataggttgatcaaggttccatatcagacaataact |
269 |
Q |
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| T |
47762548 |
cagctcataggttgatcaaggttccatatcagacaataact |
47762588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 38971460 - 38971399
Alignment:
| Q |
57 |
caatatatgagaacaaataagaaagtcagaataaactaatactaagttataaacataagaatata |
121 |
Q |
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| T |
38971460 |
caatatatgagaacaaataag---gtcagaataaattactactaagttataaacataagaatata |
38971399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 38971554 - 38971508
Alignment:
| Q |
13 |
gcatagggggtcattaagggatagattgttaacacagtcacacacaa |
59 |
Q |
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| T |
38971554 |
gcataggggatcattaagggatagattgtttacacagtcacacacaa |
38971508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 41791470 - 41791424
Alignment:
| Q |
13 |
gcatagggggtcattaagggatagattgttaacacagtcacacacaa |
59 |
Q |
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| T |
41791470 |
gcataggggatcattaagggatagattgtttacacagtcacacacaa |
41791424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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