View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10285_low_7 (Length: 283)
Name: NF10285_low_7
Description: NF10285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10285_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 5379533 - 5379317
Alignment:
| Q |
19 |
aatgccacaaaaactaccttgcttaaaactaactctcaattcaagtctcaaagaccatgtatgatagatatatgctccacaagaagactttcaataccct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5379533 |
aatgccacaaaaactaccttgcttaaaactaactctcaattcaagtctcaaagaccatgtatgatagatatatgctccacaagaagactttcaataccct |
5379434 |
T |
|
| Q |
119 |
tagcttaccctacaagtacaattaacatttaataccaacatgcttatataatataattgtataataaagtcttgtaaccaaattcaaaccatatttatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5379433 |
tagcttaccctacaagtacaattaacatttaataccaacatgcttatataatataattgtataataaagtcttgtaaccaaattcaaaccatatttatca |
5379334 |
T |
|
| Q |
219 |
caatctctctcaagttt |
235 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
5379333 |
caaactctctcaagttt |
5379317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 43262185 - 43262218
Alignment:
| Q |
179 |
ataataaagtcttgtaaccaaattcaaaccatat |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
43262185 |
ataataaagtcttgtaaccaaatccaaaccatat |
43262218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University