View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10286_low_1 (Length: 238)
Name: NF10286_low_1
Description: NF10286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10286_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 36494835 - 36494994
Alignment:
| Q |
64 |
acgtcactcaaattaatcactaatcttattttctccatcgatttcaattcttcacctaaattagaattagggtttttcattttccccttttcccaaaaac |
163 |
Q |
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| T |
36494835 |
acgtcactcaaattaatcactaatcttattttctccatcgatttcaatttttcacctaaattagaattagggtttttcattttccccttttcccaaaaac |
36494934 |
T |
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| Q |
164 |
caataatttctcgcacaaatggttgaaaaatcggtactttcaataacaaacgaggattct |
223 |
Q |
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| T |
36494935 |
caagaatttctcgcacaaatggttgaaaaatcggtactttcaataacaaacgaggattct |
36494994 |
T |
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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36494722 - 36494781
Alignment:
| Q |
1 |
caattccaaaaactcacccaagaaaaacaaaccaaacataatcaaaatcaatcataacat |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36494722 |
caattccaaaaactcacccaagaaaaacaaaccaaacataatcaaaatcaatcataacat |
36494781 |
T |
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