View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10286_low_2 (Length: 236)
Name: NF10286_low_2
Description: NF10286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10286_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 23706650 - 23706848
Alignment:
| Q |
19 |
agttaggaatttaaaactaatgaaaaaatgcaaatgatttccaaaacacagcatatataataggaaaaatcactacaaatagaacttaaaatttcaaaac |
118 |
Q |
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| T |
23706650 |
agttaggaatttaaaactaatgagaaaatgcaaatgatttccaaaacacaacatatataataggaaaaatcactacaaatagaacttaaaatttcaaaac |
23706749 |
T |
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| Q |
119 |
atagatatccatgacctacaaaactaacatatctcaaaggttcattaattacttaccattcaaattcattataacatacttcaaacttgtctcccttttc |
218 |
Q |
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| T |
23706750 |
atggatatccatgacctacaaaactaacatatctcaaaggttc----attacttaccattcagattcattataacatacttcaaacttgtctcccttttc |
23706845 |
T |
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Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 40819095 - 40818897
Alignment:
| Q |
19 |
agttaggaatttaaaactaatgaaaaaatgcaaatgatttccaaaacacagcatatataataggaaaaatcactacaaatagaacttaaaatttcaaaac |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40819095 |
agttaggaatttaaaactaatgagaaaatgcaaatgatttccaaaacacaacatatataataggaaaaatcactacaaatagaacttaaaatttcaaaac |
40818996 |
T |
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| Q |
119 |
atagatatccatgacctacaaaactaacatatctcaaaggttcattaattacttaccattcaaattcattataacatacttcaaacttgtctcccttttc |
218 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
40818995 |
atggatatccatgacctacaaaactaacatatctcaaaggttc----attacttaccattcagattcattataacatacttcaaacttgtttcccttttc |
40818900 |
T |
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