View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10287_high_1 (Length: 399)
Name: NF10287_high_1
Description: NF10287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10287_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 23666888 - 23667270
Alignment:
| Q |
1 |
tatctctcctctccgtgtctttgtactacgtaggcagtaaatagttacctcagattccaaaaatgtcggtgtgtgtgggtctcaaagaagaaacatatcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23666888 |
tatctctcctctccgtgtctttgtactacgtaggcagtaaatagttacctcagattccaaaaatgtcggtgtgtgtgggtctcaaagaagaaacatatcg |
23666987 |
T |
|
| Q |
101 |
aaagataaagcaaaaagaagcaagtaaataacacagcagtgtgggctaattttgcagaagctataatatatggtacgaaaatgaggctcagaaattcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23666988 |
aaagataaagcaaaaagaagcaagtaaataacacagcagtgtgggctaattttgcagaagctataatatatggtacgaaaatgaggctcagaaattcatg |
23667087 |
T |
|
| Q |
201 |
catgttctactttcatggatatgtgaactgttcaactgttaca-acccctttcaacagtgttttttaatcataatcgttcaaccttcaacctctatagtt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23667088 |
catgttctactttcatggatatgtgaactgttcaactgttacatacccctttcaacagtgttttttaatcataatcgttcaaccttcaacctctatagtt |
23667187 |
T |
|
| Q |
300 |
ttgtattaatccataatatgtagtatcaaaattataaggacgttattattcctttgtttcatttgcatcttcttattcttttt |
382 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23667188 |
ttgtattaatccataatatggagtatcaaaattataaggacgttattattcctttgtttcatttgcatcttcttattcttttt |
23667270 |
T |
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