View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10287_high_6 (Length: 237)
Name: NF10287_high_6
Description: NF10287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10287_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44153753 - 44153974
Alignment:
| Q |
1 |
tttatcggctttggttggtcctcatctgcatcaataattattaatcagacaagcacgcacacaattgaattgaacaaactataatgaagaaacgttatta |
100 |
Q |
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| T |
44153753 |
tttatcggctttggttggtcctcatctgcatcaataattattaatcagacaagcacgcacacaattgaattgaacaaactataattaagaaacgttatta |
44153852 |
T |
|
| Q |
101 |
ttagtaaattaagcaaatgaaatcaatcagaaagaacaataataacgaccgaaaatctctctttgagtttccatttcaaataaaattcaaattaaagaca |
200 |
Q |
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| T |
44153853 |
ttagtaaattaagcaaatgaaatcaatcaggaagaacaataataacgaccgaaaatctctctttgagtttccatttcaaataaaattcaaattaaagaca |
44153952 |
T |
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| Q |
201 |
tgcacacggttgaattgaacta |
222 |
Q |
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||||||| |||||||||||||| |
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| T |
44153953 |
tgcacacagttgaattgaacta |
44153974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40898472 - 40898699
Alignment:
| Q |
1 |
tttatcggctttggttggtcctcatctgcatcaataattattaatcagacaagcacgcacacaattgaattgaacaaactataatgaagaaacgttatta |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40898472 |
tttatcgcctttggttggtcctcatctgcatcaataattattaatcagacaagcacgcacacaattgaattgaacaaactataatgaagaaacgttatta |
40898571 |
T |
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| Q |
101 |
ttagtaaatta--------agcaaatgaaatcaatcagaaagaacaataataacgaccgaaaatctctctttgagtttccatttcaaataaaattcaaat |
192 |
Q |
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| T |
40898572 |
ttagtaaattagtaaattaagcaaatgaaatcaatcagaaagaacaataataacaaccgaaaatctctct--gagtttccatttcaaataaaattcaaat |
40898669 |
T |
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| Q |
193 |
taaagacatgcacacggttgaattgaacta |
222 |
Q |
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| T |
40898670 |
taaagacatgcacacggttgaattgaacta |
40898699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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