View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10287_low_3 (Length: 312)
Name: NF10287_low_3
Description: NF10287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10287_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 22790565 - 22790285
Alignment:
| Q |
19 |
aaatattccactgtaatgcatgaactgcagactatgaaatacctcgagttgaactgtgctgaatcaagagttataggttgtagacttgtgtgtattcttc |
118 |
Q |
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| T |
22790565 |
aaatattccactgtaatgcatgaactgcagactatgaaatacctcgagttgaactgtgctgaatcaagagttataggttgtagacttgtgtgtattcttc |
22790466 |
T |
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| Q |
119 |
ttattcctcaccaaattcaagcaa--tacgtaccatatatataatataaacacaatatagaagttgatttctagaaatgattgataaataatggtgtaga |
216 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22790465 |
ttattcctcaccaaattcaagcaagatacgtaccatatatataatataaacacaatatagaagttgatttctagaaatgattgataaataatggtgtaga |
22790366 |
T |
|
| Q |
217 |
agaggatgacaaatgagaaaaatatattatgaaatgaaaacacgaataattgtctaaaaggtttgggtttccatacctatg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22790365 |
agaggatgacaaatgagaaaaatatattatgaaatgaaaacacgaataattgtctcaaaggtttgggtttccatacctatg |
22790285 |
T |
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