View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10287_low_5 (Length: 254)
Name: NF10287_low_5
Description: NF10287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10287_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 40894938 - 40894720
Alignment:
| Q |
18 |
gaacatctactattactattatacatcaagtgacatttttcgcttgtcattgtcgcaagagattttggtgttgccttcaaaatcatca---aactaatca |
114 |
Q |
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| T |
40894938 |
gaacatctactattactattatacatcaagtgacatttttcgcttgtcaatgtcgcaagagtttttggtgttgccttcagaatcatcatcaaactaatca |
40894839 |
T |
|
| Q |
115 |
tcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtcctcagattctttgccttttcctc |
214 |
Q |
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| T |
40894838 |
tcttcagaatcatcatttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaatgtcctcagattctttgtcttttcctc |
40894739 |
T |
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| Q |
215 |
ctgcatgaatcaataatca |
233 |
Q |
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|| || ||||||||||||| |
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| T |
40894738 |
ctacaagaatcaataatca |
40894720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 44153434 - 44153575
Alignment:
| Q |
92 |
cttcaaaatcatcaaactaatcatcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtc |
191 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44153434 |
cttcagaatcatcaaactaatcgtcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtc |
44153533 |
T |
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| Q |
192 |
ctcagattctttgccttttcctcctgcatgaatcaataatca |
233 |
Q |
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| T |
44153534 |
ctcagattctttgccttttcctcctgcatgaatcaataatca |
44153575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 40898077 - 40898301
Alignment:
| Q |
16 |
atgaacatctactattactattatacatcaagtgacatttttcgcttgtcattgtcgcaagagattttggtgttgccttcaaaatcatcaaactaat-ca |
114 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |
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| T |
40898077 |
atgaacatctactattactattataca------gacatttttcgcttgtcattgtcgcaagagattttggttttgccttcagaatcatcaaactaaggca |
40898170 |
T |
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| Q |
115 |
tcttcag------------aatcatcattcgcatctgctgatttccacttcggcacatcaga---gctcagctcctccaaggttgaaatgtcctcagatt |
199 |
Q |
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| |||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40898171 |
taatcagcaccaaaaacagaatcatcatttgcatctgctgatttccacttctgcacatcagaagagctcagctcctccaaggttgaaatgtcctcagatt |
40898270 |
T |
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| Q |
200 |
ctttgccttttcctcctgcatgaatcaataa |
230 |
Q |
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| T |
40898271 |
ctttgccttttcctcctgcatgaatcaataa |
40898301 |
T |
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