View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10287_low_7 (Length: 244)
Name: NF10287_low_7
Description: NF10287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10287_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 5177625 - 5177432
Alignment:
| Q |
36 |
tagggtctgaactaccagcaccaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctc |
135 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5177625 |
tagggtctgaactaccacaaccaacactgtaatatacaaacgataatagatttggagcatcaatgttgatctccttcatgtcagaacaaaaagatatctc |
5177526 |
T |
|
| Q |
136 |
caacaccttaagttgaacacttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5177525 |
caacaccttaagttgaacacttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaac |
5177432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 8552609 - 8552751
Alignment:
| Q |
80 |
aatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatattaatcttctcagaca |
179 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8552609 |
aatagatttggagcatcaatgttgacctctttcatgttatggcaaccagataactccaacaccttaagttgaacacttgaaatattaatcgtctcagaca |
8552708 |
T |
|
| Q |
180 |
tagtgcaactgtccaattccaaactctcaaggaaaggaaattt |
222 |
Q |
| |
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| ||||| || | |||| ||| |||||||||||||| ||||| |
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| T |
8552709 |
ttgtgcatttgacaaatttcaatctctcaaggaaagggaattt |
8552751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 8306034 - 8305899
Alignment:
| Q |
80 |
aatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatattaatcttctcagaca |
179 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8306034 |
aatagatttggagcatcaatgttgacctctttcatgttatggcaatgagataactccaacaccttaagttgaacacttgaaatattaatcgtctcagaca |
8305935 |
T |
|
| Q |
180 |
tagtgcaactgtccaattccaaactctcaaggaaag |
215 |
Q |
| |
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| ||||| || | |||| ||| ||||||||||||| |
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| T |
8305934 |
ttgtgcatttgacaaatttcaatctctcaaggaaag |
8305899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5178443 - 5178403
Alignment:
| Q |
1 |
gacaatgacatacggtacctcgatgaatgctcctttagggt |
41 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
5178443 |
gacaatgacatacggtacctcgatgaatgctcctttggggt |
5178403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 5175110 - 5174936
Alignment:
| Q |
55 |
accaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaaca |
154 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||| || ||||||| | ||| |||||||||||||||||||||| |
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| T |
5175110 |
accaacaccgcaatatacacacaataatagatttggcgcatcaatgttgacctccttcaagttagaacaatcaaatagctccaacaccttaagttgaaca |
5175011 |
T |
|
| Q |
155 |
cttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaac |
229 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
5175010 |
cttgaaatattaatcttctcggacatagtgcaattgtccaatttcaaactctcaaggaaaggaaatttaggaaac |
5174936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 5204260 - 5204085
Alignment:
| Q |
54 |
caccaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaac |
153 |
Q |
| |
|
||||| |||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||| ||||| ||||||||||||||||||||| |
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|
| T |
5204260 |
caccaccaccataaaatacacacgataatagatttggagcgtcaatgttgacctccttcaagttagaacaattagataactccaacaccttaagttgaac |
5204161 |
T |
|
| Q |
154 |
acttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaac |
229 |
Q |
| |
|
|||||||||||||||| |||| |||| | ||| ||| ||| | |||||||||||||||||||||||||| |||| |
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|
| T |
5204160 |
acttgaaatattaatcctctcgaacatcctacaattgttcaacttcaaactctcaaggaaaggaaattttgaaaac |
5204085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 5193995 - 5193826
Alignment:
| Q |
60 |
caccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttga |
159 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||| ||||| | ||||||||||||||||| ||||||| |
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| T |
5193995 |
caccgtgatatacacatgataatagatttggagcatcaatgttgacctccttcaagttagaacaattagataaccccaacaccttaagttgatcacttga |
5193896 |
T |
|
| Q |
160 |
aatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaac |
229 |
Q |
| |
|
||||| |||| |||| | ||| || || ||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5193895 |
aatatcaatcctctcggccattgtacagttgttcaatttcaaactctcaaggaaaggaaattttggaaac |
5193826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 6230683 - 6230526
Alignment:
| Q |
66 |
aatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatatt |
165 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || |||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
6230683 |
aatatacacacgataatagatttggagcatcaatattaacctccttcaagttagaacaatcagataactccaacaccttaagttgaacacttgaaatatt |
6230584 |
T |
|
| Q |
166 |
aatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaatttt |
223 |
Q |
| |
|
|||| |||| | ||| || ||| ||||||| |||||||||||||||| |||||||| |
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|
| T |
6230583 |
aatcctctcggccattgtacaatcatccaatttcaaactctcaaggaaacgaaatttt |
6230526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 1797164 - 1797315
Alignment:
| Q |
77 |
gataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatattaatcttctcag |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || | |
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|
| T |
1797164 |
gataatagatttggagcatcaatgttgacctccttcaagttagaacaatgagataactccaacaccttaagttgaacacttgaaatattaatcttgtcgg |
1797263 |
T |
|
| Q |
177 |
acatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaac |
229 |
Q |
| |
|
||| || ||| |||||| | ||||||| |||||| |||||||||||||| |
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|
| T |
1797264 |
ccattgtacaataacccaatttc-aactctctaggaaatgaaattttggaaac |
1797315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 5183685 - 5183534
Alignment:
| Q |
66 |
aatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatatt |
165 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| || |||||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||| |
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|
| T |
5183685 |
aatatacacatgataatagatttggagcatcaatattaacctccttcaagttagaacaattagataacttcaacaccttaagttgaacacttgaaatatt |
5183586 |
T |
|
| Q |
166 |
aatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaagga |
217 |
Q |
| |
|
|||| |||||| ||| | ||| | ||||| |||||||||||||||||| |
|
|
| T |
5183585 |
aatcgtctcagccattttacaataatgcaattttaaactctcaaggaaagga |
5183534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 228
Target Start/End: Complemental strand, 5170898 - 5170736
Alignment:
| Q |
66 |
aatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatatt |
165 |
Q |
| |
|
|||||||| | || |||||||| |||||||||||| ||||||||||| || | | ||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5170898 |
aatatacacatgacaatagattgggagcatcaatgccgacctccttcaagttatagcaatgtgataactccaacaccttaagttgaacacttgaaatatt |
5170799 |
T |
|
| Q |
166 |
aatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaa |
228 |
Q |
| |
|
|||| | || ||||| ||||| | | ||||| ||| |||||||||||||| |||||| |||| |
|
|
| T |
5170798 |
aatcctttcggacattttgcaattttgcaatttcaacctctcaaggaaagggaattttcgaaa |
5170736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 49611126 - 49610984
Alignment:
| Q |
80 |
aatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatattaatcttctcagaca |
179 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || | ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
49611126 |
aatagatttggagcatcaatgttaacctccttcaagttaaggcaatgagataactccaacaccttaagttgaacacttgaaatattaatcgtctcagaca |
49611027 |
T |
|
| Q |
180 |
tagtgcaactgtccaattccaaactctcaaggaaaggaaattt |
222 |
Q |
| |
|
| |||||| || | |||| ||| ||||||||||||| ||||| |
|
|
| T |
49611026 |
ttgtgcaattggcaaatttcaatatctcaaggaaagggaattt |
49610984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 1181048 - 1180961
Alignment:
| Q |
142 |
cttaagttgaacacttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaac |
229 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| || ||| | ||| ||| |||| |||||||||||| ||||| ||||| |||||| |
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|
| T |
1181048 |
cttaagtcgaacacttgaaatatcaatcttcttaggcattttacaattgtttaatttcaaactctcaagaaaagggaatttcggaaac |
1180961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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