View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10287_low_9 (Length: 239)
Name: NF10287_low_9
Description: NF10287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10287_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42837135 - 42836908
Alignment:
| Q |
1 |
aaaaattgcaatcaggaggctcacacactcaaaaattgcaatcaatgtcatgtggaaatcagccacgtgaattaagcttgagaggtgtttgattgattct |
100 |
Q |
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| T |
42837135 |
aaaaattgcaatcaggaggctcacacactcaaaaattgcaatcaatgttatgtggaaatcagccacgtgaattaagcttgagaggtgtttgattgattct |
42837036 |
T |
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| Q |
101 |
tgttttgtagcttcatacccattaatggatcgaacacgccgtcgtccgtctcaacgtggccgtcgtccatctcccaccatt-aagtttccgtcgtcgatg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||| | |
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| T |
42837035 |
tgttttgtagcttcatacccattaatggatcgaacacgccgtcgtccgtctcaatgtcgccgtcgtccatctcccaccgttgaagtttccgtcgtcgagg |
42836936 |
T |
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| Q |
200 |
aaaagattgaaatcgatgttgtggttga |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42836935 |
aaaagattgaaatcgatgttgtggttga |
42836908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3137660 - 3137885
Alignment:
| Q |
1 |
aaaaattgcaatcaggaggctcacacactcaaaaattgcaatcaatgtcatgtggaaatcagccacgtgaattaagcttgagaggtgtttgattgattct |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3137660 |
aaaaattgcaatcaggaggctcacacactcaaaaattgcaatcaatgtcatgtggaaatcagccacgtgaattaagcttgacaggtgtttgattgattct |
3137759 |
T |
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| Q |
101 |
tgttttgtagcttcatacccattaatggatcgaacacgccgtcgtccgtctcaacgtggccgtcgtccatctcccacc-attaagtttccgtcgtcgatg |
199 |
Q |
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| T |
3137760 |
tgttttgtagtttcatacccattaatggatcgaacacgccatcgtccgtctcaacgtcgccgt--tccatctcccgccgctgaagtttccgtcgtcgagg |
3137857 |
T |
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| Q |
200 |
aaaagattgaaatcgatgttgtggttga |
227 |
Q |
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|||||||||||||||| ||||||||||| |
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| T |
3137858 |
aaaagattgaaatcgacgttgtggttga |
3137885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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