View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10288_low_1 (Length: 617)
Name: NF10288_low_1
Description: NF10288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10288_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 101 - 610
Target Start/End: Complemental strand, 7198096 - 7197587
Alignment:
| Q |
101 |
acttctctgaaaaagttcaccaagtgaagtcctatgttctttcttaccaacacttgtaactgctgtttcagacatttcaacagctgttccaaacaaataa |
200 |
Q |
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| T |
7198096 |
acttctctgaaaaagttcaccaagtgaagtcctatgttctttcttaccaacactagtaactgctgtttcagacatttcaacagctgttccaaacaaataa |
7197997 |
T |
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| Q |
201 |
ccttgtaaaggacaaacagcatttgtgtctgttccttcaataggttttccacttattgttactatgctgacatggctacttcttccagtgctgacatggc |
300 |
Q |
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| T |
7197996 |
ccttgtaaaggacaaacagcatttgtgtctgttccttcaattggttttccacttattgttactatgctgacatggctacttcttccagtgctgacatggc |
7197897 |
T |
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| Q |
301 |
tacttcttcctgtgctgacatggctgtttctgcttgaagaatcatagcttagtacatcatcttttgtttcagcaccaagaactttctctaactcatcatt |
400 |
Q |
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| T |
7197896 |
tacttcttccagtgctgacatggctgtttctgcttgaagaatcatagcttagtacatcatcttttgtttcagcaccaagaactttctctaactcatcatt |
7197797 |
T |
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| Q |
401 |
gatgagtttgagatcattttcagttacttcgtcttcgttttcattttcggttatggtttgaactgagattggaaatgatggtgttgatggatttgatgaa |
500 |
Q |
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| T |
7197796 |
tatgagtttgagatcattttcagttacttcgtcttcgttttcattttcggttatggtttgaactgagattggaaatgatggtgttgatagatttgatgaa |
7197697 |
T |
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| Q |
501 |
attggttggtctgatccaagtgttccaattgcaaggaagccagggaagagatcaaacatagcatcatcatcttgtgattgtctgccatattcttcttcat |
600 |
Q |
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| T |
7197696 |
attggttggtctgatccaagtgttccaattgcaaggaagccagggaagagatcaaacatagcatcatcatcttgtgattgtctgccatattcttcttcat |
7197597 |
T |
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| Q |
601 |
gttcttctct |
610 |
Q |
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| T |
7197596 |
gttcttctct |
7197587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7198196 - 7198161
Alignment:
| Q |
1 |
ccatattcagagcagaagaatatttctcagcatccc |
36 |
Q |
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| T |
7198196 |
ccatattcagagcagaagaatatttctcagcatccc |
7198161 |
T |
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