View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10288_low_11 (Length: 239)
Name: NF10288_low_11
Description: NF10288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10288_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 23612408 - 23612192
Alignment:
| Q |
12 |
caaaggctgagcaactcaaactaggggaagaaaaatatgtgaatgatcacaatgccaataatt--atttgtttcaatatatagataggacaattcttgaa |
109 |
Q |
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| T |
23612408 |
caaaggcggagcaactcaaactaggggaagaaaaatatgtgaatgatctcaatgccaataattttatttgtttcaatatatagataggacaattcttgaa |
23612309 |
T |
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| Q |
110 |
atgattcttaacaaagtaacatcaaaggatatttggaattccatgaaacagaagcatacgagatcttccaaggttgaaagggcacaattacat---gtga |
206 |
Q |
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| T |
23612308 |
atgattcttaataaagtaacatcaaaggatatttggaattccatgaaacagaagcatgcgagatcttccaaggttgaaagggcacaattacatatgatga |
23612209 |
T |
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| Q |
207 |
tgtaaatagcaagatgg |
223 |
Q |
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| T |
23612208 |
tgtaaatagcaagatgg |
23612192 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 38708932 - 38708997
Alignment:
| Q |
101 |
attcttgaaatgattcttaacaaagtaacatcaaaggatatttggaattccatgaaacagaagcat |
166 |
Q |
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| T |
38708932 |
attcttaaaacgattcttaaccaagaaacatcgaaggatatatgggattccataaaacagaagcat |
38708997 |
T |
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