View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10288_low_2 (Length: 535)

Name: NF10288_low_2
Description: NF10288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10288_low_2
NF10288_low_2
[»] chr4 (11 HSPs)
chr4 (18-535)||(21833639-21834174)
chr4 (263-384)||(1755035-1755156)
chr4 (263-368)||(641483-641588)
chr4 (18-222)||(53761371-53761575)
chr4 (235-376)||(3438082-3438223)
chr4 (153-432)||(55908104-55908380)
chr4 (235-419)||(1600930-1601114)
chr4 (307-419)||(53761252-53761364)
chr4 (263-376)||(547470-547583)
chr4 (485-533)||(1601177-1601225)
chr4 (76-108)||(10634134-10634166)
[»] chr5 (5 HSPs)
chr5 (75-434)||(28532074-28532439)
chr5 (172-419)||(41888937-41889187)
chr5 (263-384)||(32268029-32268150)
chr5 (75-113)||(32267841-32267879)
chr5 (272-377)||(41900966-41901071)
[»] chr7 (4 HSPs)
chr7 (18-437)||(10614896-10615318)
chr7 (18-419)||(10169525-10169926)
chr7 (18-419)||(10177050-10177451)
chr7 (18-105)||(10167383-10167470)
[»] chr6 (6 HSPs)
chr6 (76-437)||(6588700-6589064)
chr6 (149-360)||(6416403-6416614)
chr6 (76-126)||(6602887-6602937)
chr6 (154-218)||(8913659-8913723)
chr6 (76-165)||(6426860-6426949)
chr6 (154-222)||(6594189-6594257)
[»] chr1 (3 HSPs)
chr1 (23-437)||(19467876-19468290)
chr1 (76-222)||(33160874-33161020)
chr1 (263-360)||(17352198-17352295)
[»] chr3 (4 HSPs)
chr3 (18-419)||(51763835-51764236)
chr3 (137-359)||(13470184-13470406)
chr3 (79-126)||(514407-514454)
chr3 (200-341)||(514192-514333)
[»] chr2 (1 HSPs)
chr2 (153-432)||(1037040-1037316)
[»] chr8 (1 HSPs)
chr8 (317-377)||(27922699-27922759)


Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 21834174 - 21833639
Alignment:
Q  18 ggtacacaccaaaatccaccaaagattcagaattccctccactcttactcccaatacgttccattttgatctcactaagtgaatgacagttcttaacaag 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  21834174 ggtacacaccaaaatccaccaaagattcagaattccctcgactcttactcccaatatgttccattttgatctcactaagcgaatgacagttcttaacaag 21834075  T
Q  118 tgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattc 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834074 tgtaaacaaagcacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattc 21833975  T
Q  218 agaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaagga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21833974 agaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcattttcgaagga 21833875  T
Q  318 caagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaact 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21833874 caagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccaagatatacaaagaacgcaaactaagacaagtcaaacccttcaaact 21833775  T
Q  418 cagtaatgagccaataaaatat------------------aaatatgaagcagcgaagtctggtatgacataagcgctactactagaaaaggataaagaa 499  Q
    || |||||||||||||||||||                  ||| || |||||| || |||||| ||| |||||  |||||||| ||||||||||||||||    
T  21833774 cactaatgagccaataaaatatgaagcagtgaagccaataaaacataaagcagtgatgtctggcatgccataactgctactaccagaaaaggataaagaa 21833675  T
Q  500 ctcaatgttggcctctcgaggagagctgaagcaatg 535  Q
    ||||||||||| |||||  |||||||||||||||||    
T  21833674 ctcaatgttggtctctcacggagagctgaagcaatg 21833639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 384
Target Start/End: Original strand, 1755035 - 1755156
Alignment:
Q  263 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 362  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| || ||| ||||||||| | |||||||||| || | ||||||||||||| || |    
T  1755035 ttggataacaaacatcggattccatcataactatagccggtgcaatgtccaagcacaagcctcttcaaaggaagacttttcattgcaatagagtacagca 1755134  T
Q  363 actcatccgagatatacaaaga 384  Q
     |||||||||||||| ||||||    
T  1755135 gctcatccgagatattcaaaga 1755156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 641483 - 641588
Alignment:
Q  263 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 362  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| |  |||||||| ||||| |||||||| |||| | ||||||||||| |||| |    
T  641483 ttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtcaaaggaaggcctttcattgcaatagaggagagaa 641582  T
Q  363 actcat 368  Q
    ||||||    
T  641583 actcat 641588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 53761575 - 53761371
Alignment:
Q  18 ggtacacaccaaaatccaccaaagattcagaattccctccactcttactcccaatacgttccattttgatctcactaagtgaatgacagttcttaacaag 117  Q
    |||| |||||||  |||| | |||||||||||||| || || ||| | |||| || | ||||||||||||||||||||||||| ||||||| ||| ||||    
T  53761575 ggtatacaccaagctccatcgaagattcagaattctctacaatctcattccctattctttccattttgatctcactaagtgaaggacagtttttagcaag 53761476  T
Q  118 tgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattc 217  Q
    || |||||| |    ||  |||| ||||| ||||| ||||||||||||||| | ||||||||||||||   || |||| |  |||||||||||||  |||    
T  53761475 tgcaaacaaggccaattttgtgatcttataacaacgactaaggtttatggacaccaaatcaccaagaagcaaagacaaatttacaacatgttgattgttc 53761376  T
Q  218 agaaa 222  Q
    |||||    
T  53761375 agaaa 53761371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 3438223 - 3438082
Alignment:
Q  235 aagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaagga 334  Q
    ||||||||||||||| | ||  ||||  |||||||||| | |||||||| || ||||||||||||||||||||||  | |||||||||||  | ||||||    
T  3438223 aagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaagga 3438124  T
Q  335 agaccttcccttgcaatagagtagagtaactcatccgagata 376  Q
    |||||| |  ||||||||||| | ||||| ||||||| ||||    
T  3438123 agacctccaattgcaatagaggaaagtaattcatccgggata 3438082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 432
Target Start/End: Complemental strand, 55908380 - 55908104
Alignment:
Q  153 cactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggac 252  Q
    ||||||||||||| || | |||||||||||||||  || ||||||   | ||||  |||||||||| |||| ||  || || ||||||||||||||| |     
T  55908380 cactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtat 55908281  T
Q  253 accatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaata 352  Q
    ||   |||  |||||||||||| |  | |||||| ||||| ||||||||||||||||| | |||||||| ||  | |||||||||||| || ||||||||    
T  55908280 ac---gacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaata 55908184  T
Q  353 gagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaat 432  Q
    ||  | || || |||||||||||   ||||||   |||| |||||||||| || || ||||||||||  || ||||||||    
T  55908183 gaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaat 55908104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 419
Target Start/End: Original strand, 1600930 - 1601114
Alignment:
Q  235 aagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaagga 334  Q
    |||| |||||||||||| ||  ||||  ||||||||||||| ||  | ||||  |||||||||||| ||| ||| |   ||| |||||||| | ||||||    
T  1600930 aagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataactatagccagtgaaatatgcgaggtcaagcctcctcaaagga 1601029  T
Q  335 agaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactca 419  Q
     ||  |||| ||||||||||| |||| |||| ||||||||||  | || |   |||   ||||||||||||||||||||||||||    
T  1601030 ggattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaaactca 1601114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 419
Target Start/End: Complemental strand, 53761364 - 53761252
Alignment:
Q  307 atttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaa 406  Q
    |||| |||||||||| || || |||||||||| |||| |||||||||||||||| |||| ||| || ||    |||    ||||| ||||| ||||||||    
T  53761364 attttgaaggacaagacttgtcaaaggaagacattcctttgcaatagagtagagcaacttatctgaaattcctaaatgctgcaaattaagagaagtcaaa 53761265  T
Q  407 cccttcaaactca 419  Q
    |||||||||||||    
T  53761264 cccttcaaactca 53761252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 547470 - 547583
Alignment:
Q  263 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 362  Q
    ||||| || |||||| | |||||| ||||||||||||||   |||||| | ||||||||| |  | ||||||| | ||||| ||||||||||| |||| |    
T  547470 ttggacaaaaaacaagatattccagcataactatagccgaaacaattttggaggacaagctttctcaaaggaatagcttccattgcaatagaggagagca 547569  T
Q  363 actcatccgagata 376  Q
    ||  ||||||||||    
T  547570 acatatccgagata 547583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
Q  485 gaaaaggataaagaactcaatgttggcctctcgaggagagctgaagcaa 533  Q
    |||||||||||||| ||||||||||| |||||  ||||||| |||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 10634166 - 10634134
Alignment:
Q  76 ttccattttgatctcactaagtgaatgacagtt 108  Q
    ||||||||||||||||||||||||| |||||||    
T  10634166 ttccattttgatctcactaagtgaaggacagtt 10634134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 75 - 434
Target Start/End: Original strand, 28532074 - 28532439
Alignment:
Q  75 gttccattttgatctcactaagtgaatgacagttcttaacaagtgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaa 174  Q
    |||||||| ||||||||| |||| || |||||||| || | |||| |||||||||   ||| || ||||||||||||  ||||||||| ||||| |||||    
T  28532074 gttccattgtgatctcaccaagtaaaggacagttcctagcgagtgcaaacaaagatgattctgttagcttatcacaattactaaggttgatggacatcaa 28532173  T
Q  175 atcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacct------ttggat 268  Q
    |||||||||||| ||| ||||||||| |||||||||||||||||||||| |  ||  | ||| || ||||||| ||| ||| |||| |      ||||||    
T  28532174 atcaccaagaaacgaagacaactggataacatgttgatcattcagaaacttactaagtccaatatacaaatgtcggaaaccttgacgtcgacacttggat 28532273  T
Q  269 aacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcat 368  Q
    ||||||||||||| ||| ||||||||||||||   || ||||   ||||||||| |  | |||||||||||| |||||||||||| |||||| |||||||    
T  28532274 aacaaacaaaagagtccgtcataactatagccccagcgattttttaggacaagctttatcaaaggaagacctccccttgcaatagtgtagagcaactcat 28532373  T
Q  369 ccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaataa 434  Q
    | || ||||  ||| ||  ||||| |||||||||||||||||| |||||||  |||||| ||||||    
T  28532374 cagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataa 28532439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 419
Target Start/End: Complemental strand, 41889187 - 41888937
Alignment:
Q  172 caaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataac 271  Q
    ||||||||||||||||||| ||||||  |||||||||| || ||||||||| |   ||| || |||||||||| |||||| |   | ||  |||||||      
T  41889187 caaatcaccaagaaatgaagacaactccacaacatgtttatgattcagaaaaacaatattttgaagatccaaaagttggatatgttcacacttggatagt 41889088  T
Q  272 aaacaaaagattccatcataactatagccggtgcaatttcg-aaggacaa--gcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcat 368  Q
    ||||||||||||||| |||||||| |||||||||||||| | | ||| ||   ||| || ||| ||| ||||| | ||||||||||| | || | |||||    
T  41889087 aaacaaaagattccagcataactaaagccggtgcaattttgtagggagaaccacctagtcaaaagaaaaccttgcattgcaatagaggaaagcatctcat 41888988  T
Q  369 ccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactca 419  Q
    | ||||||| |||||||  ||||  ||||||||||||   |||||||||||    
T  41888987 cggagatattcaaagaaaacaaatcaagacaagtcaagtacttcaaactca 41888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 384
Target Start/End: Original strand, 32268029 - 32268150
Alignment:
Q  263 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 362  Q
    |||||||  ||| ||| |||||||  ||| |||||||||||||||| | | || ||||||||||| |||||||||| ||    |||||||||| |||| |    
T  32268029 ttggatagtaaagaaaggattccagaatagctatagccggtgcaatcttggagaacaagcctcgtcaaaggaagacattggtatgcaatagaggagagca 32268128  T
Q  363 actcatccgagatatacaaaga 384  Q
    ||||||| ||||||| ||||||    
T  32268129 actcatctgagatattcaaaga 32268150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 32267841 - 32267879
Alignment:
Q  75 gttccattttgatctcactaagtgaatgacagttcttaa 113  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  32267841 gttccattttgatctcactaagtgaagggcagttcttaa 32267879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 41901071 - 41900966
Alignment:
Q  272 aaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccg 371  Q
    |||||||  ||||||  ||||||||| |||||||||||| | || |||||||| || ||||| |||||||   |||||||||||  ||| ||| |||| |    
T  41901071 aaacaaataattccagaataactataaccggtgcaattttggagaacaagcctagtcaaaggtagaccttggattgcaatagagatgagaaacacatctg 41900972  T
Q  372 agatat 377  Q
    ||||||    
T  41900971 agatat 41900966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 10614896 - 10615318
Alignment:
Q  18 ggtacacaccaaaatccaccaaagattcagaattccctccactcttactc---ccaatacgttccattttgatctcactaagtgaatgacagttcttaac 114  Q
    |||| |||||||| ||| |||| || ||||||||| || ||||| |||||   ||||| | |||||||||||| |||| ||||  | |||||||||||      
T  10614896 ggtatacaccaaactccgccaatgaatcagaattctctacactcgtactcttcccaattccttccattttgatttcaccaagtagaggacagttcttagt 10614995  T
Q  115 aagtgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatca 214  Q
     |||| | |||||||   ||  ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
T  10614996 gagtgcatacaaagataattttgtgagcttaacacaacaactaaggtttatggacatcaaatcaccaagaaatgaagacaattggacaacatgttgatca 10615095  T
Q  215 ttcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataacta---tagccggtgcaatttc 311  Q
    |||||||||     |  ||||||||||||||||||||  || ||||  |||||||| |||||| |||||||| ||||||||   | ||||   |||| ||    
T  10615096 ttcagaaac---ggaagttcaagatccaaatgttggaagccttgacacttggataataaacaatagattccagcataactatggtggccgaaacaatgtc 10615192  T
Q  312 gaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaaccctt 411  Q
    | |||  || |||||| |||||||||||  |||||||||||||||| |  || | ||  ||||||| || | |  |||||  |||||||||||| |||||    
T  10615193 ggagggtaaacctcgtcaaaggaagacccacccttgcaatagagtaaaacaagttatttgagatattcataaactgcaaatcaagacaagtcaagccctt 10615292  T
Q  412 caaactcagtaatgagccaataaaat 437  Q
    ||||||||  |||||| |||||||||    
T  10615293 caaactcaccaatgagtcaataaaat 10615318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 10169926 - 10169525
Alignment:
Q  18 ggtacacaccaaaatccaccaaagattcagaattccctccactcttactcccaatacgttccattttgatctcactaagtgaatgacagttcttaacaag 117  Q
    |||| ||||||||||||  |||||| ||||||||  ||  |||||||||||| |||  ||||||||||||||||||||||||| |||| ||| |||| ||    
T  10169926 ggtatacaccaaaatccggcaaagaatcagaattgtctaaactcttactccctatattttccattttgatctcactaagtgaaggacaattcctaacgag 10169827  T
Q  118 tgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattc 217  Q
    || |||||| ||    |  |||| ||    |||   |||||||||||  || |  |||||||||| |||  || | ||||   ||||||  |||||||||    
T  10169826 tgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacactaaatcaccaataaacaaagaaaactcatcaacatagtgatcattc 10169727  T
Q  218 agaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaagga 317  Q
    || || |||  || |||||||||||  ||||| | |||  |||  || ||| ||||||||||||||||| |||| || ||| |   ||||| ||  |||     
T  10169726 aggaaaatggcatgttcaagatccatgtgttgcaaacctcgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaatatctgaggg 10169627  T
Q  318 caagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaact 417  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||||| || ||| | ||||  |||| |||||||||||||||||||    
T  10169626 caagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacccttcaaact 10169527  T
Q  418 ca 419  Q
    ||    
T  10169526 ca 10169525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 10177451 - 10177050
Alignment:
Q  18 ggtacacaccaaaatccaccaaagattcagaattccctccactcttactcccaatacgttccattttgatctcactaagtgaatgacagttcttaacaag 117  Q
    |||| ||||||||||||  |||||| ||||||||  ||  |||||||||||| |||  ||||||||||||||||||||||||| |||| ||| |||| ||    
T  10177451 ggtatacaccaaaatccggcaaagaatcagaattgtctaaactcttactccctatattttccattttgatctcactaagtgaaggacaattcctaacgag 10177352  T
Q  118 tgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattc 217  Q
    || |||||| ||    |  |||| ||    |||   |||||||||||  || |  |||||||||| |||  || | ||||   ||||||  |||||||||    
T  10177351 tgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacactaaatcaccaataaacaaagaaaactcatcaacatagtgatcattc 10177252  T
Q  218 agaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaagga 317  Q
    || || |||  || |||||||||||  ||||| | |||  |||  || ||| ||||||||||||||||| |||| || ||| |   ||||| ||  |||     
T  10177251 aggaaaatggcatgttcaagatccatgtgttgcaaacctcgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaatatctgaggg 10177152  T
Q  318 caagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaact 417  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||||| || ||| | ||||  |||| |||||||||||||||||||    
T  10177151 caagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacccttcaaact 10177052  T
Q  418 ca 419  Q
    ||    
T  10177051 ca 10177050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 10167470 - 10167383
Alignment:
Q  18 ggtacacaccaaaatccaccaaagattcagaattccctccactcttactcccaatacgttccattttgatctcactaagtgaatgaca 105  Q
    |||| ||||||||||||  |||||| ||||||||  ||  |||||||||||| |||  ||||||||||||||||||||||||| ||||    
T  10167470 ggtatacaccaaaatccggcaaagaatcagaattgtctaaactcttactccctatattttccattttgatctcactaagtgaaggaca 10167383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 76 - 437
Target Start/End: Complemental strand, 6589064 - 6588700
Alignment:
Q  76 ttccattttgatctcactaagtgaatgacagttcttaacaagtgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaa 175  Q
    ||||||| ||||||||| |||| || |||| ||| || |||||| ||||||||    ||| |||| ||||   |||  ||||||||||| ||| | ||||    
T  6589064 ttccattgtgatctcaccaagtaaaggacacttcctagcaagtgcaaacaaagctgattctgtgatcttactgcaattactaaggtttacggacaccaaa 6588965  T
Q  176 tcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacac---catgacctttggataaca 272  Q
    ||||||||||| ||| |||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||    |||||   |||||||||    
T  6588964 tcaccaagaaaggaagacaattcgacaacatgttgatcattcagaaacctattatcttcaagatccaaatgttggaaacttttatgacacatggataaca 6588865  T
Q  273 aacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccga 372  Q
    || |||||| ||||| ||||  |  ||| |  |||| |   || ||||| || || |||||||||| || ||||||||||| |||||| |||||||| ||    
T  6588864 aataaaagagtccattataataacggccagaacaatatttgagtacaagtcttgtcaaaggaagacgtttccttgcaatagtgtagagcaactcatcgga 6588765  T
Q  373 gatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaataaaat 437  Q
    ||||| ||||| |  ||||| |||||||||||||| |||||||||||  |||||| |||| ||||    
T  6588764 gatattcaaagcagacaaaccaagacaagtcaaactcttcaaactcaccaatgagtcaattaaat 6588700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 360
Target Start/End: Original strand, 6416403 - 6416614
Alignment:
Q  149 caaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgtt 248  Q
    |||| ||||||||||||||| |||||| ||| |||||| | | |||| |||||||||||||||||||| ||||||     |  |||||||| ||||||||    
T  6416403 caacaactaaggtttatggacatcaaaccactaagaaacggagacaattggacaacatgttgatcattaagaaac---gaaagttcaagattcaaatgtt 6416499  T
Q  249 ggacaccatgacctttggataacaaacaaaagattccatcataactat---agccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttccct 345  Q
    |||  || ||||  ||||||||||||| ||| |||||| || ||||||    |||    |||| ||| |||  || |||||| |||||||||||||||||    
T  6416500 ggatgccttgacacttggataacaaacgaaatattccagcagaactatgggggccaaaacaatgtcggagggtaaacctcgtcaaaggaagaccttccct 6416599  T
Q  346 tgcaatagagtagag 360  Q
    ||||||| |||||||    
T  6416600 tgcaatacagtagag 6416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 6602937 - 6602887
Alignment:
Q  76 ttccattttgatctcactaagtgaatgacagttcttaacaagtgtaaacaa 126  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtttttaacaagtgaaaacaa 6602887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 8913723 - 8913659
Alignment:
Q  154 actaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattca 218  Q
    |||||||||||| || | ||||| |||||||||  || |||||| ||||||||||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcattca 8913659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 6426860 - 6426949
Alignment:
Q  76 ttccattttgatctcactaagtgaatgacagttcttaacaagtgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttat 165  Q
    ||||||||| |||||||||| |||| |||||||  ||||||||| |||||| |    ||| ||||| | || ||||||||||||||||||    
T  6426860 ttccattttaatctcactaattgaaggacagtttctaacaagtgaaaacaatgttgtttctgtgagatgatgacaaccactaaggtttat 6426949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 6594257 - 6594189
Alignment:
Q  154 actaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaa 222  Q
    ||||||||| |||||  ||||| || |||||||  || |||||| | ||||||||||||||||||||||    
T  6594257 actaaggttaatggacttcaaaccagcaagaaacaaagacaactcggcaacatgttgatcattcagaaa 6594189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 23 - 437
Target Start/End: Complemental strand, 19468290 - 19467876
Alignment:
Q  23 acaccaaaatccaccaaagattcagaattccctccactcttactcccaatacgttccattttgatctcactaagtgaatgacagttcttaacaagtgtaa 122  Q
    ||||||||||||  |||||| ||||||||| || |||||||||||||||||  ||||||||||||||||||||||||| |||| ||| |||| |||||||    
T  19468290 acaccaaaatccggcaaagaatcagaattctctacactcttactcccaatattttccattttgatctcactaagtgaaggacaattcctaacgagtgtaa 19468191  T
Q  123 acaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaa 222  Q
    |||| |     |  ||||| |    |||  ||||||||||||| || |  ||||||||||||||  || ||||||   ||||||  |||||||||| |||    
T  19468190 acaaggttgaatatgtgaggtccatacattcactaaggtttatagacactaaatcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaa 19468091  T
Q  223 catgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagc 322  Q
    |     |  || ||||||||||||||| | |||   ||  |||||||||||||||||||||||| |||| |||| |||   ||||| |   |||||||||    
T  19468090 cccagcacgttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagc 19467991  T
Q  323 ctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagta 422  Q
    ||||| ||||| || ||||||| ||||||||||||||| |  ||||| ||||||| || | | | | || ||||| |||||||||||||||||||||| |    
T  19467990 ctcgtcaaaggtagcccttcccgtgcaatagagtagagcatttcatcagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaactcagca 19467891  T
Q  423 atgagccaataaaat 437  Q
    ||||| |||||||||    
T  19467890 atgagtcaataaaat 19467876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 33160874 - 33161020
Alignment:
Q  76 ttccattttgatctcactaagtgaatgacagttcttaacaagtgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaa 175  Q
    |||||||||||| |||||||||||| |||||||  ||||||||| |||||| |    ||| |||||| |   ||| ||| |||||||||| || | ||||    
T  33160874 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaa 33160973  T
Q  176 tcaccaagaaatgaatacaactggacaacatgttgatcattcagaaa 222  Q
     || |||||||  || | |||| | ||||||||||||||||||||||    
T  33160974 gcagcaagaaacaaagagaactcggcaacatgttgatcattcagaaa 33161020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 360
Target Start/End: Original strand, 17352198 - 17352295
Alignment:
Q  263 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagag 360  Q
    |||||||||||| ||||  ||||| ||||||| ||||| ||| ||| | |||||||||| ||| | ||||||| ||| ||| ||||||||||| ||||    
T  17352198 ttggataacaaagaaaaagttccagcataactgtagccagtggaatattgaaggacaagtctcctgaaaggaaaaccctcctttgcaatagaggagag 17352295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 51764236 - 51763835
Alignment:
Q  18 ggtacacaccaaaatccaccaaagattcagaattccctccactcttactcccaatacgttccattttgatctcactaagtgaatgacagttcttaacaag 117  Q
    |||| |||||||| ||||||||||| ||||||||| || |||  |   |||||||   ||||||||||||||||| ||||||| |||| | | || ||||    
T  51764236 ggtatacaccaaagtccaccaaagaatcagaattctctacacaatccgtcccaatgttttccattttgatctcaccaagtgaaggacaatacctagcaag 51764137  T
Q  118 tgtaaacaaagaacgttcagtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattc 217  Q
     |||| ||| |    ||  |||||||||  ||||||||||||||||||||| | ||||| || ||||||  || |||| |  |||||||||  |||||||    
T  51764136 agtaagcaaggctgatttggtgagcttaggacaaccactaaggtttatggacaccaaattactaagaaacaaagacaaatttacaacatgtatatcattc 51764037  T
Q  218 agaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaagga 317  Q
    |||||      ||||| ||||||||||||||  | ||  ||||  ||||||| |||||||| ||||||| ||||||||||||| |||||| || ||||||    
T  51764036 agaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaagga 51763937  T
Q  318 caagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaact 417  Q
    |||||||  | ||| ||||||||||||||||||| |||||||| |||||||| ||||| | ||||     ||||  |||| |||||||||||||||||||    
T  51763936 caagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaact 51763837  T
Q  418 ca 419  Q
    ||    
T  51763836 ca 51763835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 137 - 359
Target Start/End: Complemental strand, 13470406 - 13470184
Alignment:
Q  137 gtgagcttatcacaaccactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaa 236  Q
    |||||||||  ||||| ||||||||||||||| |||||| ||| |||||| ||| |||| |||| |||||||||||||||||||||||    |   ||||    
T  13470406 gtgagcttaagacaacaactaaggtttatggacatcaaaccactaagaaacgaagacaattggagaacatgttgatcattcagaaaca---aaagctcaa 13470310  T
Q  237 gatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactat---agccggtgcaatttcgaaggacaagcctcgttaaagg 333  Q
    |||| ||||||||||  || ||||  ||||||||||||| ||| |||||| |||||||||    |||    |||| ||| ||| ||| |||||| |||||    
T  13470309 gatctaaatgttggatgccttgacacttggataacaaacgaaatattccagcataactatgggggccaaaacaatgtcggagggcaaacctcgtcaaagg 13470210  T
Q  334 aagaccttcccttgcaatagagtaga 359  Q
    ||||||||||||||||||| ||||||    
T  13470209 aagaccttcccttgcaatacagtaga 13470184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 514454 - 514407
Alignment:
Q  79 cattttgatctcactaagtgaatgacagttcttaacaagtgtaaacaa 126  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  514454 cattttgatctcactaagtgaaggacagttcttaacaagtgcaaacaa 514407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 341
Target Start/End: Complemental strand, 514333 - 514192
Alignment:
Q  200 acaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagc 299  Q
    ||||||||||||||||| || || | |  ||||| ||||| ||||||||| |  |  | || ||||||||||||| |||||||||||||||| |  ||||    
T  514333 acaacatgttgatcattgaggaaaagggcatcttgaagattcaaatgttgtatccatttacatttggataacaaagaaaagattccatcatagccgtagc 514234  T
Q  300 cggtgcaatttcgaaggacaagcctcgttaaaggaagacctt 341  Q
    |||| ||| | || || ||||| ||| |||||||||||||||    
T  514233 cggtacaactacggagcacaagtctccttaaaggaagacctt 514192  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 432
Target Start/End: Complemental strand, 1037316 - 1037040
Alignment:
Q  153 cactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggac 252  Q
    ||||||||||||| || | |||||||||||||||  || ||||||   | ||||  |||||||||| |||| ||  || || ||||||||||||||| |     
T  1037316 cactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtat 1037217  T
Q  253 accatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaata 352  Q
    ||   |||  |||||||||||| |  | |||||| ||||| |||||| |||||||||| | |||||||| ||  | |||||||||||| || ||||||||    
T  1037216 ac---gacacttggataacaaagagtatattccaacataattatagctggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaata 1037120  T
Q  353 gagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaat 432  Q
    ||  | || || |||||||| ||   ||||||   |||| |||||||||| || || ||||||||||  || ||||||||    
T  1037119 gaaaaaagcaattcatccgaaatgcgcaaagatgacaaattaagacaagttaagccattcaaactcaccaacgagccaat 1037040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 27922699 - 27922759
Alignment:
Q  317 acaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatat 377  Q
    ||||||||||| ||||| |||| |||  | ||||||||| |||| ||||||||||||||||    
T  27922699 acaagcctcgtcaaaggtagacgttcggtggcaatagaggagagcaactcatccgagatat 27922759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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