View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10288_low_4 (Length: 433)
Name: NF10288_low_4
Description: NF10288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10288_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 28 - 339
Target Start/End: Original strand, 38277894 - 38278211
Alignment:
| Q |
28 |
taattagcttgttatatggtcatgtatctttatttggccgaaccttactaatcagac----cagagcatgaccctaattatttttagactagaatacact |
123 |
Q |
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| T |
38277894 |
taattagcttgttatattgtcatgtatctttatttggccgaaccttactaatcagacagaccagagcatgaccctaattatttttagactagaatacacg |
38277993 |
T |
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| Q |
124 |
gacattatagggattcatatatataatttgtttcattttattcaata--caaatgattttgatgacgtttgagacaaatttcatgacataaagtaactac |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
38277994 |
gacattatagggattcatatatataatttgtttcattttattcaatatacaaatgattttgatgacgtttgagacaaatttcatgtctgaaagtaactac |
38278093 |
T |
|
| Q |
222 |
tatatatcatgttcgatttattaaagtctcacatcgatcacaatacaacatatcgttacatttataattgtctcagatgtcaattttaagtgtgaggcat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
38278094 |
tatatatcatgttcgatttattaaagtctcacatcgatcacaatacaacatatcattatatttataattgtctcatatgtcaattttaagtgtgaggcat |
38278193 |
T |
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| Q |
322 |
gtgtaagggaaataaatt |
339 |
Q |
| |
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|||||||||||||||||| |
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| T |
38278194 |
gtgtaagggaaataaatt |
38278211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 98 - 303
Target Start/End: Original strand, 38271760 - 38271959
Alignment:
| Q |
98 |
taattatttttagactagaatacactgacattatagggattcatatatataatttgtttcattttattcaatacaaatgattttgatgacgtttgagaca |
197 |
Q |
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| T |
38271760 |
taattctttttagactagagttcaccggcattataaggattcatgta----attggttttattttattcaatacaaatgattttgatgatgtttgagaca |
38271855 |
T |
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| Q |
198 |
aatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaacatatcgttacatttataattgtctcag |
297 |
Q |
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| T |
38271856 |
aatttcatgacagaaagtgactcc--tatatcatgttggatttagtaaagtcccacatccaacacaatagaacaaaacattatgtttatatttgtctcaa |
38271953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 38273443 - 38273610
Alignment:
| Q |
98 |
taattatttttagactagaatacactgacattatagggattcatatatataatttgtttcattttattcaatacaaatgattttgatgacgtttgagaca |
197 |
Q |
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| T |
38273443 |
taattatttttagcctagaatgcacagacattatagagattc----gtataattggtttcattttattcaatacaaatgattttggtgatgtttgaggca |
38273538 |
T |
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| Q |
198 |
aatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaaca |
271 |
Q |
| |
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|||||||||||| || || ||||| |||||||||||||||||| ||||| ||||||| ||| |||||||| |
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| T |
38273539 |
aatttcatgacagaacgtgactac--tatatcatgttcgatttaggaaagttctacatcgaacaccatacaaca |
38273610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 38270557 - 38270688
Alignment:
| Q |
174 |
atgattttgatgacgtttgagacaaatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaacata |
273 |
Q |
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| T |
38270557 |
atgattttgatgatgtttgagacaaatttcatgacagaaagtgactac--tatatcatgttggatttagtaaagtcccacttcgaacacaatacaacaaa |
38270654 |
T |
|
| Q |
274 |
tcgttacatttataattgtctcagatgtcaattt |
307 |
Q |
| |
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| | | |||||| |||||||| |||||||||| |
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| T |
38270655 |
acatcatgtttatatttgtctcaaatgtcaattt |
38270688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 337 - 412
Target Start/End: Original strand, 38278243 - 38278320
Alignment:
| Q |
337 |
attttggtatgtgtatacatagtttcatttta--gtcctctatattggattagaatttctttttccgacctattaact |
412 |
Q |
| |
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|||||||| || |||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38278243 |
attttggtctgcgtatacatagtttcattttatagacctctatattggatgagaatttctttttccgacctattaact |
38278320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 38279481 - 38279575
Alignment:
| Q |
177 |
attttgatgacgtttgagacaaatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaaca |
271 |
Q |
| |
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|||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||| | |||||| ||| | ||||||| |||||||||||| |
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| T |
38279481 |
attttgatgatgtttgagacaaatttcatgacagaaagtaattactgcatatcatgttggttttatttaaggcccacatcggacacaatacaaca |
38279575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 10593196 - 10593090
Alignment:
| Q |
106 |
tttagactagaatacactgacattatagggattcatatatataatttgtttcattttattcaatacaaatga-ttttgatgacgtttgagacaaatttca |
204 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| ||||||| |||||||||||| ||||||||||| ||||||||| |||||||| ||||||| |
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| T |
10593196 |
tttagactagaatacacggacattgtagggattc----gtataattaatttcattttattgaatacaaatgatttttgatgatatttgagactaatttca |
10593101 |
T |
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| Q |
205 |
tgacataaagt |
215 |
Q |
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| T |
10593100 |
tgacaaaaagt |
10593090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 26572749 - 26572849
Alignment:
| Q |
172 |
aaatgattttgatgacgtttgagacaaatttcatgacataaagtaactactatatatcatgttcgatttattaaagtctcacatcgatcacaatacaaca |
271 |
Q |
| |
|
|||| |||||||||| |||||||||||||| |||||| ||||||||||||| | |||||||| | ||||||||||| |||||| | ||||||||||| |
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| T |
26572749 |
aaataattttgatgatttttgagacaaattttatgacagaaagtaactacta-acatcatgttaggtttattaaagttccacatcaaaaacaatacaaca |
26572847 |
T |
|
| Q |
272 |
ta |
273 |
Q |
| |
|
|| |
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| T |
26572848 |
ta |
26572849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 26577141 - 26577227
Alignment:
| Q |
98 |
taattatttttagactagaatacactgacattatagggattcatatatataatttgtttcattttattcaatacaaatgattttgatga |
186 |
Q |
| |
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||||||||||||||||| ||||||| |||| ||| |||||| ||| || ||| | ||||||| ||||||||||| |||||||||||| |
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| T |
26577141 |
taattatttttagactaaaatacacatacatcatatggattcttattta--attggcttcatttgattcaatacaattgattttgatga |
26577227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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