View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10288_low_5 (Length: 431)
Name: NF10288_low_5
Description: NF10288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10288_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Complemental strand, 20210170 - 20209768
Alignment:
| Q |
14 |
atcagctacaagagcatattattctttggtcttagtcattataaagctatagtatgtttaagaatatggacttatgtccctttatgaaattgtgtagttc |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20210170 |
atcagctacaagaggatattattctttggtcttagtcattataaagctatagtatgtttaagaatatggacttatgtccctttatgaaattgtgcagttc |
20210071 |
T |
|
| Q |
114 |
cctaattaataatctcatgagttttcttgtagcatctatctatttgtaactctagctctaattttgggtatttattttatataatgtatgtgctctatta |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
20210070 |
cctaattaataatctcatgacttttcttgtagcatctatctatttgttactctagctctaattttgtgtatttattttatataatgtatgtgttctatta |
20209971 |
T |
|
| Q |
214 |
acttgtaaatgatttttgtgaggtcataaatcaaaatagtcaaagtgtatatatattttcgtgagtgcttagtccatttacaaggtggttactcttagaa |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
20209970 |
acttgtaaatgatttttgtgagctcataaatcaaaatagtcaaaatgtatatatattttcgtgagtgcttagtccattcacaaggtggttactcttaaga |
20209871 |
T |
|
| Q |
314 |
tagatccttcgaagtccctcttcttttgtataaaatatacaatcaatatgtgtgctcttttcgacatggaactaccatattttttaattcacataacact |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20209870 |
tagatccttcgaagtccctcttcttttgtataa---atacaatcaatatgtgtgctcttttcgacatgggactaccatattttttaattcacataacact |
20209774 |
T |
|
| Q |
414 |
agttct |
419 |
Q |
| |
|
|||||| |
|
|
| T |
20209773 |
agttct |
20209768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 33424178 - 33424139
Alignment:
| Q |
380 |
tggaactaccatattttttaattcacataacactagttct |
419 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33424178 |
tggaactaccatattttttaattcacagaacactaattct |
33424139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University