View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10288_low_6 (Length: 379)
Name: NF10288_low_6
Description: NF10288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10288_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 3908518 - 3908144
Alignment:
| Q |
7 |
aacttggtgttgaatgaatcacaccttggacacttctgaggttgaggatgagcttgaacaagcttactcatctcacctcttcttccaccatctccacttt |
106 |
Q |
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| T |
3908518 |
aacttggtgttgaatgaatcacacctaggacacttctgaggttgaggatgagcttgaacaagcttactcatctcacctcttcttccaccatctccacttt |
3908419 |
T |
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| Q |
107 |
cttgctccatctctcagtttttatttgagtgtgcgttttctaaacagagacgtgccatatttataatcaaaaataacaaaacaaaaaccggttgctactg |
206 |
Q |
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| T |
3908418 |
cttgctccatctctcagtttttatttgagtgtgcgttttctaaacagagacgtgccatatttataatcaaaaataagaaaacaaaaaccggttgctactg |
3908319 |
T |
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| Q |
207 |
ctattggttggtttctggtttttcttacgattcaactattaagggaaaagtgtttgaaaagtttgatt-----------ttttgagtctgaattaagaaa |
295 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3908318 |
ctattggttggtttctggtttttcttacgatgcaaccattaagggaaaagtgtttgaaaagtttgattttttcggatttttttgagtctgaattaagaaa |
3908219 |
T |
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| Q |
296 |
ttcttctacttgtctctgcaaaattaatatcaaaatctaccttgaccaaaacaacggcgatcttttaccctttgc |
370 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3908218 |
ttgttctacttgtctctgcaaaattaatatgaaaatctaccttgaccaaaacaacggcgatcttttaccctttgc |
3908144 |
T |
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