View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10288_low_7 (Length: 357)
Name: NF10288_low_7
Description: NF10288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10288_low_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 2230564 - 2230914
Alignment:
| Q |
1 |
aaacaaaatataaacctctttcatcttcaacaaatttgagaaagaaaaagtgagggcgaggaagcgagtcacacaacaacgacttgattaactcagttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
2230564 |
aaacaaaatataaacctctttcatcttcaacaaatttgagaaagaaaaagtgagggcga--------gtcacacaacaacgacttgattaactcggttgg |
2230655 |
T |
|
| Q |
101 |
attaatggagttttgtgactcggtgttgtcgtgatggtggtagaaaagagtgaaaataatgaatgatgtattgatcttataaattaataaataattgaag |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2230656 |
attaatggagttttgtgacttggtgttgtcgtgatggtggtagaaaagggtgaaaataatgaatgatgtattgatcttataaattaataaataattgaag |
2230755 |
T |
|
| Q |
201 |
g----taaatatttcaaataagacacataatacaattaagaggaatcaataatttgaaattttacattagtatatagagacttttgataattcctatata |
296 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
2230756 |
gtaattaaatatttcaaataagacacataatacaattaagaggaatcaataatttgaaattttacattag--tatagagacttttgataattcctaaata |
2230853 |
T |
|
| Q |
297 |
gatttaattggtatggatatatagttacaaggtttttataggttgcatttgaagaattata |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2230854 |
gatttaattggtatggatatatagttacaaggtttttttaggttgcatttgaagaattata |
2230914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University