View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10288_low_8 (Length: 252)
Name: NF10288_low_8
Description: NF10288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10288_low_8 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34155372 - 34155137
Alignment:
| Q |
1 |
aggacaaattcgtgatttaattatttttattattctaaattaatgtttcaggttttgaagcaggaggttccaatgtttcatcaaatatcaatccatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34155372 |
aggacaaattcgtgatttaattatttttattattctaaattaatgtttcaggttttgaagcagggggttccaatgtttcatcaaatatcaatccatggat |
34155273 |
T |
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| Q |
101 |
aattattggagataattcatcatcgattatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttagatgttctttgtcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||| |
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| T |
34155272 |
aattattggagataattcatcatcgattatcgtatcaactgatcgttcatcttgttttgagtgtaataaggttgctttacgttcagatgttctttgtcaa |
34155173 |
T |
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| Q |
201 |
ggacaatcatgtccacttggtgttgttggtatctcc |
236 |
Q |
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| T |
34155172 |
ggacaatcatgtccacttggtggtgttggtatctcc |
34155137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 34168533 - 34168768
Alignment:
| Q |
1 |
aggacaaattcgtgatttaattatttttattattctaaattaatgtttcaggttttgaagcaggaggttccaatgtttcatcaaatatcaatccatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34168533 |
aggacaaattcgtgatttaattatttttattattctaaattaatgtttcaggttttgaagcagggggttccaatgtttcatcaaatatcaatccatggat |
34168632 |
T |
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| Q |
101 |
aattattggagataattcatcatcgattatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttagatgttctttgtcaa |
200 |
Q |
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| T |
34168633 |
aattattggagataattcatcatcgattatcgtatcaactgatcgttcatcttgttttgagtgtaataaggttgctttacgttcagatgttctttgtcaa |
34168732 |
T |
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| Q |
201 |
ggacaatcatgtccacttggtgttgttggtatctcc |
236 |
Q |
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| T |
34168733 |
ggacaatcatgtccacttggtggtgttggtatctcc |
34168768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 34208743 - 34208978
Alignment:
| Q |
1 |
aggacaaattcgtgatttaattatttttattattctaaattaatgtttcaggttttgaagcaggaggttccaatgtttcatcaaatatcaatccatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
34208743 |
aggacaaattcgtgatttaattatttttattattctaaattaatgtttgaggttttgaagcaggaggttccaatgtttcatcaaatattaatctatggac |
34208842 |
T |
|
| Q |
101 |
aattattggagataattcatcatcgattatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttagatgttctttgtcaa |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34208843 |
tattattgaagataattcatcatcgattatcgtatcaactgatcgttcctcttgttttgagcgtaataaggttgctttacgtttagatgttctttgtcaa |
34208942 |
T |
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| Q |
201 |
ggacaatcatgtccacttggtgttgttggtatctcc |
236 |
Q |
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| T |
34208943 |
ggacaatcatgtccacttggtggtgttggtatctcc |
34208978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28855 - 29090
Alignment:
| Q |
1 |
aggacaaattcgtgatttaattatttttattattctaaattaatgtttcaggttttgaagcaggaggttccaatgtttcatcaaatatcaatccatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
28855 |
aggacaaattcgtgatttaattatttttattattctaaattaatgtttcaggttttgaagnagggggttccaatgtttcatcaaatatcaatccatggat |
28954 |
T |
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| Q |
101 |
aattattggagataattcatcatcgattatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttagatgttctttgtcaa |
200 |
Q |
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| T |
28955 |
aattattgnagataattcatcatcgattatcgtatcaactgatcgttcatcttgttttgagngtaataaggttgctttacgttnagatgttctttgtcaa |
29054 |
T |
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| Q |
201 |
ggacaatcatgtccacttggtgttgttggtatctcc |
236 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
29055 |
ggacaatcatgtccacttggtggtgttggtatctcc |
29090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 38726602 - 38726455
Alignment:
| Q |
91 |
atccatggacaattattggagat---aattcatcatcgattatcgtatcaacggatcgttcctcttgttttgagcgtaataaggttgcttaacgtttaga |
187 |
Q |
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||||||||||||||||||||||| ||| ||| || |||| |||||||| ||| |||||| |||||||||||||||| ||||| | ||| | || |
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| T |
38726602 |
atccatggacaattattggagatcagaataaatcttccattactgtatcaactgatatgtcctctagttttgagcgtaataaagttgcgttacgcatgga |
38726503 |
T |
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| Q |
188 |
tgttctttgtcaaggacaatcatgtccacttggtgttgttggtatctc |
235 |
Q |
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| T |
38726502 |
tattctttgtcaaggaaaatcttgtccgcgtagcggtgttggtatctc |
38726455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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