View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10288_low_9 (Length: 251)
Name: NF10288_low_9
Description: NF10288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10288_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 41047154 - 41046930
Alignment:
| Q |
19 |
ctttctggttaactatttctcactctcttattc---atccaatttcaattcataataatttttggcaaacctaatcacgcttttaggtatggattcatgt |
115 |
Q |
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| T |
41047154 |
ctttctggttaactatttctcactctcttattcttcatccaatttcaattcataataatttctgacaaacctaatcgcgcttttaggtatggattcatgt |
41047055 |
T |
|
| Q |
116 |
ttggcagagaatcctctcgcaaagaactctctcatctaattgaagaactccgtagcggtaatccaccacctcctcctcattcttgaacctcgatgaattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41047054 |
ttggcagagaatcctctcgcaaagaactctctcatctaatcgaagaactccgtagcggtaatccaccacctcctcctcattcttgaacctcgatgaattc |
41046955 |
T |
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| Q |
216 |
gctgcgccgtctagagtagcttcat |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
41046954 |
gctgcgccgtctagagtagcttcat |
41046930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 21240273 - 21240481
Alignment:
| Q |
32 |
tatttctcactctcttattcatccaatttcaattcataataatttttggcaaacctaatcacgcttttaggtatggattcatgtttggcagagaatcctc |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21240273 |
tatttctcactctcttattcatccaatttcaattcataataatttctgacaaacctaatcgcgcttttaggtatggattcatgtttggcagagaatcctc |
21240372 |
T |
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| Q |
132 |
tcgcaaagaactctctcatctaattgaagaactccgtagcggtaatccaccacctcctcctcattcttgaacctcgatgaatttgctgcgccgtctagag |
231 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21240373 |
tcgcaaagaactctctcatctaatcgaagaactccgtagcggtaatccaccacctcctcctcattcttgaacctcgatgaattcgctgcgccgtctagag |
21240472 |
T |
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| Q |
232 |
tagcttcat |
240 |
Q |
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||||||||| |
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| T |
21240473 |
tagcttcat |
21240481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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