View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10289_high_14 (Length: 249)

Name: NF10289_high_14
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10289_high_14
NF10289_high_14
[»] chr8 (1 HSPs)
chr8 (13-233)||(44125257-44125477)
[»] chr4 (4 HSPs)
chr4 (13-162)||(50037123-50037272)
chr4 (13-162)||(50044345-50044494)
chr4 (191-233)||(50037274-50037316)
chr4 (191-233)||(50044496-50044538)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 44125257 - 44125477
Alignment:
Q  13 ggacgttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44125257 ggactttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc 44125356  T
Q  113 agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgttggtggtggtcggaggttctgctccggtggcggttgttgaacggagattg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44125357 agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgttggtggtggtcggaggttctgctccggtggcggttgtcgaacggagattg 44125456  T
Q  213 gagaatgtggcggcgaagaag 233  Q
    ||||||||||| |||||||||    
T  44125457 gagaatgtggctgcgaagaag 44125477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 50037123 - 50037272
Alignment:
Q  13 ggacgttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50037123 ggactttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc 50037222  T
Q  113 agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50037223 agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgt 50037272  T

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Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 50044345 - 50044494
Alignment:
Q  13 ggacgttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50044345 ggactttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc 50044444  T
Q  113 agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50044445 agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgt 50044494  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 50037274 - 50037316
Alignment:
Q  191 ggcggttgttgaacggagattggagaatgtggcggcgaagaag 233  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  50037274 ggcggttgttgaacggagattggagaatgtggtggcgaagaag 50037316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 50044496 - 50044538
Alignment:
Q  191 ggcggttgttgaacggagattggagaatgtggcggcgaagaag 233  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  50044496 ggcggttgttgaacggagattggagaatgtggtggcgaagaag 50044538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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