View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10289_high_2 (Length: 615)
Name: NF10289_high_2
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10289_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 20 - 581
Target Start/End: Original strand, 25794034 - 25794594
Alignment:
| Q |
20 |
ttactaagttattcagtttgtattttcttatcatctgcatctttgtatatccttcataatttgcataagcaagattagaatatactagcattgtaatatt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25794034 |
ttactaagttattcagtttgtattttcttatcatctgcatctttgtatatccttcataatctgcataagcaagattagaatatactagcattgtaatatt |
25794133 |
T |
|
| Q |
120 |
ctcaattcatatatgtaagtaaacactcatatggtccagaatattattgctgaaaatttcttttgttcattatacaacatttataagaaatggaagttgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25794134 |
ctcaattcatatatgtaagtaaacactcatatggtccagaatattattgctgaaaatttcttttgttcattatacaacatttataagaaatggaagttgt |
25794233 |
T |
|
| Q |
220 |
tggccaactgtggttggcacacatggtaagactttcctctcatacggattacaacttaggtttgagtccaaaattccatacttggtaggttatctgtaaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25794234 |
tggccaactgtggttggcacacatggtaagactttcctctcatacggattacaacttgggtttgagtccaaaattccatacttggtaggttatctgtaaa |
25794333 |
T |
|
| Q |
320 |
ttctgttgtaaattctcaatgagtcagaaatctctttgattggctataatataagagctgatacaaaaaatttacaaaataaggaccaacactccctttt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25794334 |
ttctgttgtaaattctcaatgagtcagaaatctctttgattggctataatataagagctgatac-aaaaatttacaaaataaggaccaacactccctttt |
25794432 |
T |
|
| Q |
420 |
tgctccccatcttgaccatatgatcataannnnnnnaaacaaagacaatatcaagaggggtgttcggattccagatttcaaatgtgtaaagattctgaaa |
519 |
Q |
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| T |
25794433 |
tgctccccatcttgaccatatgatcataatttttttaaacaaagacaatatcaagaggggtgttcggattccagatttcaaatgtgtaaagattctgaaa |
25794532 |
T |
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| Q |
520 |
aaacagataccgtggctaaatttttcccttgacggattctaaaatccgaaaatcgagaggca |
581 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25794533 |
aaacagataccgtggctaattttttcccttgacggattctaaaatccgaaaatcgagaggca |
25794594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 10440941 - 10440829
Alignment:
| Q |
20 |
ttactaagttattcagtttgtattttcttatcatctgcatctttgtatatccttcataatttgcataagcaagattagaatatacta-gcattgtaatat |
118 |
Q |
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||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||| |||||| | ||||| |||||||||||| |
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| T |
10440941 |
ttacttagttattcagtctgtattttcttatcatcggcatcattgtatatcctacataatttgcacaagcaaaattagagtgtactaggcattgtaatat |
10440842 |
T |
|
| Q |
119 |
tctcaattcatat |
131 |
Q |
| |
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|||||| |||||| |
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| T |
10440841 |
tctcaaatcatat |
10440829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 10093640 - 10093743
Alignment:
| Q |
62 |
ttgtatatccttcataatttgcataagcaagattagaatatactag-cattgtaatattctcaattcatatatgtaagtaaacactcatatggtccagaa |
160 |
Q |
| |
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||||| ||||||| |||||||||||||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||||||||||| ||| || |
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| T |
10093640 |
ttgtaaatccttcttaatttgcataagcaagagtagaatgcagcaggcattgtaatattctcaattcatatatgtaagtgaacactcatatggcccaaaa |
10093739 |
T |
|
| Q |
161 |
tatt |
164 |
Q |
| |
|
|||| |
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|
| T |
10093740 |
tatt |
10093743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 10200522 - 10200625
Alignment:
| Q |
62 |
ttgtatatccttcataatttgcataagcaagattagaatatactag-cattgtaatattctcaattcatatatgtaagtaaacactcatatggtccagaa |
160 |
Q |
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||||| ||||||| |||||||||||||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||||||||||| ||| || |
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| T |
10200522 |
ttgtaaatccttcttaatttgcataagcaagagtagaatgcagcaggcattgtaatattctcaattcatatatgtaagtgaacactcatatggcccaaaa |
10200621 |
T |
|
| Q |
161 |
tatt |
164 |
Q |
| |
|
|||| |
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|
| T |
10200622 |
tatt |
10200625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 10377611 - 10377491
Alignment:
| Q |
29 |
tattcagtttgtattttcttatcatctg--catctttgtatatccttcataatttgcataagcaagattagaatatact-agcattgtaatattctcaat |
125 |
Q |
| |
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|||||||| |||||||||||||||| | |||| ||||||||||| ||||||||||| ||||||||||||| | |||| | ||||||||||||||||| |
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| T |
10377611 |
tattcagtctgtattttcttatcatatcgacatcattgtatatcctacataatttgcacaagcaagattagagtgtactaaacattgtaatattctcaaa |
10377512 |
T |
|
| Q |
126 |
tcatatatgtaagtaaacact |
146 |
Q |
| |
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|||||| ||||||| |||||| |
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| T |
10377511 |
tcatatctgtaagtgaacact |
10377491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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