View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10289_high_3 (Length: 518)
Name: NF10289_high_3
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10289_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 510
Target Start/End: Original strand, 34785114 - 34785620
Alignment:
| Q |
17 |
aataagtccataccgtatccgcgcctttgctggaagaaagcatcttaatgtcttcattgcttcatcagttacaaaaagactagaagagaaagaacaaata |
116 |
Q |
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| T |
34785114 |
aataagtccataccgtatccgcgcctttgctggaagaaagcatcttaatgtcttcattgcttcatcagttacaaaaagactagaagagaaagaacaaata |
34785213 |
T |
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| Q |
117 |
aactaaggtcagttgctataattatat-------acaatatat--ataatttaatcattgtttttcatctacctttgtcttgatgtatcaactatatatt |
207 |
Q |
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| T |
34785214 |
aactaaggtcagttgctataattataatactataacaatatatttataatttaatcattgtttttcatctacctttgtcttgatgtatcaactatatatt |
34785313 |
T |
|
| Q |
208 |
attaat----atagtaaagttgtgacaggtgcagtaagttataaagatgatttctccatcaagtccactaaacatcaacatggaatttggtgagnnnnnn |
303 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34785314 |
attaattaatatagtaaagttgtgacaggtgcagtaagttataaagatgatttctccatcaagtccactaaacatcaacatggaatttggtgagaaaaaa |
34785413 |
T |
|
| Q |
304 |
ntggaaattgaaagagatattaatcagaatatggaagaaaggttgccagttataggagctgaagtaatccaatccgatgaacattggacagaacacataa |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34785414 |
atggaaattgaaagagatattaatcagaatatggaagaaaggttgccagttataggagctgaagtaatccaatccgatgaacattggacagaacacataa |
34785513 |
T |
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| Q |
404 |
cagtgagaggattgtttgtgagtatgatgattggaataatatatagtataatagcaatgaagctgaaccttacaacaggaatggttccaaatttgaatgt |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34785514 |
cagtgagaggattgtttgtgagtatgatgattggaataatatatagtataatagcaatgaagctgaaccttacaacaggaatggttccaaatttgaatgt |
34785613 |
T |
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| Q |
504 |
ctctgct |
510 |
Q |
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||||||| |
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| T |
34785614 |
ctctgct |
34785620 |
T |
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