View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10289_high_6 (Length: 328)

Name: NF10289_high_6
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10289_high_6
NF10289_high_6
[»] chr6 (65 HSPs)
chr6 (18-312)||(27604550-27604844)
chr6 (18-312)||(27718224-27718518)
chr6 (18-312)||(27610847-27611141)
chr6 (21-312)||(27592865-27593156)
chr6 (21-312)||(27678997-27679288)
chr6 (21-312)||(27677459-27677750)
chr6 (21-312)||(27706247-27706538)
chr6 (18-310)||(27698341-27698633)
chr6 (17-311)||(26802489-26802783)
chr6 (17-308)||(28781186-28781477)
chr6 (17-308)||(28786325-28786616)
chr6 (17-308)||(28792446-28792737)
chr6 (18-206)||(27724796-27724984)
chr6 (17-299)||(26884210-26884494)
chr6 (17-302)||(27427461-27427746)
chr6 (21-308)||(26861667-26861951)
chr6 (19-286)||(27531068-27531335)
chr6 (17-160)||(26646526-26646669)
chr6 (17-160)||(26752494-26752637)
chr6 (21-206)||(31284339-31284524)
chr6 (17-194)||(28226997-28227174)
chr6 (21-160)||(26623027-26623166)
chr6 (21-160)||(26729005-26729144)
chr6 (17-160)||(28139588-28139731)
chr6 (21-151)||(26823891-26824021)
chr6 (21-206)||(28242855-28243040)
chr6 (17-160)||(25579766-25579909)
chr6 (17-160)||(26656036-26656179)
chr6 (17-160)||(26762007-26762150)
chr6 (17-174)||(26048892-26049049)
chr6 (17-174)||(26070061-26070218)
chr6 (17-184)||(25481789-25481956)
chr6 (17-116)||(26142912-26143011)
chr6 (48-194)||(26341894-26342043)
chr6 (51-194)||(26848741-26848884)
chr6 (21-206)||(28325532-28325717)
chr6 (17-160)||(25538587-25538730)
chr6 (17-160)||(26055973-26056116)
chr6 (17-160)||(26075943-26076086)
chr6 (21-194)||(28181165-28181338)
chr6 (21-268)||(28234615-28234861)
chr6 (21-172)||(27338050-27338201)
chr6 (21-172)||(27398790-27398941)
chr6 (24-206)||(28098320-28098502)
chr6 (17-91)||(25506975-25507049)
chr6 (36-169)||(26937160-26937293)
chr6 (21-194)||(28185417-28185590)
chr6 (54-105)||(26635774-26635825)
chr6 (54-105)||(26741740-26741791)
chr6 (22-105)||(28297765-28297848)
chr6 (22-105)||(28514225-28514308)
chr6 (54-102)||(26959250-26959298)
chr6 (51-171)||(27214498-27214618)
chr6 (51-171)||(27234610-27234730)
chr6 (52-103)||(26975134-26975185)
chr6 (24-119)||(28149991-28150086)
chr6 (51-105)||(27665169-27665223)
chr6 (51-172)||(26811590-26811711)
chr6 (51-99)||(2184369-2184417)
chr6 (45-172)||(29826102-29826229)
chr6 (52-118)||(2184980-2185046)
chr6 (246-308)||(26646755-26646817)
chr6 (246-308)||(26752723-26752785)
chr6 (54-172)||(26949745-26949863)
chr6 (52-100)||(25071741-25071789)
[»] scaffold0349 (2 HSPs)
scaffold0349 (18-312)||(3265-3561)
scaffold0349 (18-312)||(14201-14494)
[»] scaffold0277 (2 HSPs)
scaffold0277 (18-299)||(4529-4810)
scaffold0277 (17-299)||(13490-13772)
[»] scaffold0419 (1 HSPs)
scaffold0419 (17-299)||(7572-7854)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-302)||(59617-59902)
[»] chr4 (10 HSPs)
chr4 (17-302)||(18073809-18074094)
chr4 (21-141)||(18699403-18699523)
chr4 (21-160)||(18655461-18655600)
chr4 (21-141)||(18679570-18679690)
chr4 (21-151)||(18731497-18731627)
chr4 (21-151)||(18724078-18724208)
chr4 (52-206)||(5090905-5091059)
chr4 (17-181)||(17989019-17989180)
chr4 (244-308)||(18655313-18655377)
chr4 (244-308)||(18723921-18723985)
[»] chr1 (3 HSPs)
chr1 (17-184)||(28127639-28127806)
chr1 (27-184)||(28164323-28164479)
chr1 (21-160)||(268341-268480)
[»] chr8 (1 HSPs)
chr8 (21-160)||(29273767-29273906)
[»] scaffold0038 (4 HSPs)
scaffold0038 (17-194)||(27495-27672)
scaffold0038 (21-206)||(43017-43202)
scaffold0038 (21-268)||(34776-35023)
scaffold0038 (21-206)||(116847-117032)
[»] chr2 (2 HSPs)
chr2 (26-105)||(3279744-3279823)
chr2 (52-105)||(17993736-17993789)
[»] scaffold0019 (1 HSPs)
scaffold0019 (21-194)||(58245-58418)
[»] scaffold1254 (1 HSPs)
scaffold1254 (17-64)||(10-57)
[»] chr5 (1 HSPs)
chr5 (39-172)||(16689080-16689213)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 65)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 27604844 - 27604550
Alignment:
Q  18 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagg 117  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604844 gaatccaggatttttattcctgtgttttctatcaaatatgcctcttcttccttttgtttggatgaacttgttcacatcattcattgctacacgacaaagg 27604745  T
Q  118 gtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtt 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||    
T  27604744 gtcgcgtcgttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtcaagcattggctgagcataaaaaaaggtt 27604645  T
Q  218 tcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 312  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604644 tcaaaatgatgaggataacataaagaggttgcagcgatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 27604550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 27718518 - 27718224
Alignment:
Q  18 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||    
T  27718518 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 27718419  T
Q  118 gtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtt 217  Q
    ||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||       ||||    
T  27718418 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtt 27718319  T
Q  218 tcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 312  Q
    |||||||||| || |||||||  |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27718318 tcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 27718224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 27611141 - 27610847
Alignment:
Q  18 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||    
T  27611141 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 27611042  T
Q  118 gtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtt 217  Q
    ||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||       ||||    
T  27611041 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaaagtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtt 27610942  T
Q  218 tcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 312  Q
    |||||||||| || |||||||  |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27610941 tcaaaatgataagaataacatggagaggttgcagggatggaaagtggctctgagccaggctgcaaacttttccggctaccatgatagtcctcctg 27610847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 27593156 - 27592865
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||    
T  27593156 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtc 27593057  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttca 220  Q
    ||    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||       |||||||    
T  27593056 gccctgttttgcctgttttctttggtgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatgaaaagaggtttca 27592957  T
Q  221 aaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 312  Q
    |||||||  | | |||||  |||||||||||  ||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27592956 aaatgatccgaaaaacatggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 27592865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 27678997 - 27679288
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||||||    
T  27678997 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtc 27679096  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttca 220  Q
    || || || |||||||||||||||||||||||||| ||  ||||||||||| |||||||||||| ||| |||||||||||||||||       |||||||    
T  27679097 gcctcgttctgcctgttttctttggtgtggaacctactgttgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttca 27679196  T
Q  221 aaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 312  Q
    |||||||  | | |||||  ||||||||||   |||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27679197 aaatgatccgaaaaacatggagaggttgcaaggatggaaaaaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 27679288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 27677750 - 27677459
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||||||    
T  27677750 tctaggatttttattgctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtc 27677651  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttca 220  Q
    || || || ||||||||||||||| |||||||||| ||  |||||||||||| ||||||||||| ||| |||||||||||||||||       |||||||    
T  27677650 gcctcgttctgcctgttttctttgctgtggaacctactattgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttca 27677551  T
Q  221 aaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 312  Q
    |||||||  | | | |||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27677550 aaatgatccgaaaagcatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 27677459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 27706538 - 27706247
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||||||    
T  27706538 tctaggatttttattcctgtgttttctatcacctatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtc 27706439  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttca 220  Q
    || || || |||||||||| |||||||| |||||| ||  ||||||||||| |||||||||||| ||| |||||||||||||||||       |||||||    
T  27706438 gcctcgttctgcctgttttatttggtgtagaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaagaggtttca 27706339  T
Q  221 aaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 312  Q
    |||||||  | | |||||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27706338 aaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 27706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 27698633 - 27698341
Alignment:
Q  18 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagg 117  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||||| ||||| ||||| ||||||  ||||||||    
T  27698633 gaatctaggatttttattcctgtgttttctctcaactatgcatcttcttcattttgtttggacgaacttgtccacataattcactgctacgagacaaagg 27698534  T
Q  118 gtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtt 217  Q
    ||||| || |||||||||||||||| |||||||||||  || ||||| ||||||||||||||||||| || ||||||||||||||||||       ||||    
T  27698533 gtcgcctcgttttgcctgttttcttcggtgtggaaccaactaatgtgagacatcataaaggtagttatggcaaagcattggctgagcatgaaaagaggtt 27698434  T
Q  218 tcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcc 310  Q
    ||||||||||  | | |||||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  27698433 tcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcc 27698341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 26802489 - 26802783
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    ||||| ||||| |||||||||||||| ||||||||||| | |||||||    
T  26802489 agaatctagaatttttattcctgtgttttctatcaactatgcctcttcaaaattttgcttggacgaacttgttcacattattcattgctataagacaaag 26802588  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    |||||| || | |||||| |||||||||||||||| ||| || ||||||| ||||||| | |||| || ||| |||||||||||||||||       |||    
T  26802589 ggtcgcctcgtcttgcctattttctttggtgtggatcctactaatgtgcgccatcatacatgtagctatggtgaagcattggctgagcatgaaaaaaggt 26802688  T
Q  217 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcct 311  Q
    ||||||||||| ||||||||||  |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26802689 ttcaaaatgataaggataacatggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcct 26802783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 28781186 - 28781477
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    ||||| ||||| |||||||||||||| ||||||||||||| ||||||     
T  28781186 agaatctaggatttttattcctgtgttttctatcaactatgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaa 28781285  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| ||||  ||| ||| ||||||||||||  |||       |||    
T  28781286 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtccttatggtgaagcattggctggacatgaaaagaggt 28781385  T
Q  217 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 308  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||  |||||||    
T  28781386 ttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 28786325 - 28786616
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | ||    ||||| ||||| |||||||||||||| ||||||||||||| ||||||     
T  28786325 agaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaa 28786424  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    |||||| || |||||||||||||||||||||| || ||| || ||||||||||||||| |||| |||| ||| |||||||||||| ||||       |||    
T  28786425 ggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggt 28786524  T
Q  217 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 308  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||  |||||||    
T  28786525 ttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 28792446 - 28792737
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | ||    ||||| ||||| |||||||||||||| ||||||||||||| ||||||     
T  28792446 agaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaa 28792545  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    |||||| || |||||||||||||||||||||| || ||| || ||||||||||||||| |||| |||| ||| |||||||||||| ||||       |||    
T  28792546 ggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggt 28792645  T
Q  217 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 308  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||  |||||||    
T  28792646 ttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28792737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 27724984 - 27724796
Alignment:
Q  18 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||    
T  27724984 gaatctaggatttttattcctgtgttttctatcaactatgcctattcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 27724885  T
Q  118 gtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 206  Q
    ||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||    
T  27724884 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcat 27724796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 26884210 - 26884494
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacat--cattcattgctacacgacaa 114  Q
    ||||||||| |||||||||||  | ||||||| ||||||||| |||||||| ||||||||||| |||||||| |||||  |||||| ||||||  |||||    
T  26884210 agaatctagaatttttattccaatattttctaccaactatgcatcttcttcattttgtttggacgaacttgtccacatgtcattcactgctacgagacaa 26884309  T
Q  115 agggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnng 214  Q
    |||||||| || |||||||||||||  |||||||||| ||| || ||||||||||||||| ||||||||| ||| ||||||||||||| |||       |    
T  26884310 agggtcgcctcgttttgcctgtttttgttggtgtggatcctactgatgtgcgacatcatacaggtagttatggtgaagcattggctgaccatgaaaaaag 26884409  T
Q  215 gtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 299  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||| ||||| |||| || | ||||||||| ||||||||||||    
T  26884410 gtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccat 26884494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 27427746 - 27427461
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||| |||||||| |||||  | ||||||  ||||||||| |||||||| | |||||||||   |||||| ||||||||||| |||||||  || |||    
T  27427746 agaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaag 27427647  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    ||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||||||||||||||||       |||    
T  27427646 ggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaataggt 27427547  T
Q  217 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 302  Q
    |||||||||||  | | |||||  ||||||||||||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  27427546 ttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 27427461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 26861667 - 26861951
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||| ||||| |||||||||||||||  ||||||||||||||| || |||||||||||||||||||| || |||||| | ||| |   |  ||||||||    
T  26861667 tctagaattttcattcctgtgttttctgccaactatgcctcttcgtcattttgtttggatgaacttgtccaaatcattaactgcaa---ggaaaagggtc 26861763  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttca 220  Q
    ||||| ||||||||||||||| |||  |||| ||| || ||||||||||||||| ||||| ||| ||| ||||||||||| |||||       |||||||    
T  26861764 gcgtcgttttgcctgttttctatggcatggatcctactaatgtgcgacatcatagaggtatttatggtgaagcattggctaagcatgaaaaaaggtttca 26861863  T
Q  221 aaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 308  Q
    |||||||  |||||||||  |||||||||||  ||||||||| ||||||| ||| ||||||||||| || |||||||||  |||||||    
T  26861864 aaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccattttagtcct 26861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 27531335 - 27531068
Alignment:
Q  19 aatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaaggg 118  Q
    ||||||||||||||||||| || ||||||   |||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||   ||||||||    
T  27531335 aatctaggatttttattcccgtattttctgaaaactatgcatcttcttcattttgtttggacgaacttgttcacatcactcattgctacgatacaaaggg 27531236  T
Q  119 tcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggttt 218  Q
    | |  |  |||||||||||||  |||||||||| ||| || ||||||||||||| | |||||| || ||| ||||||| |||| ||||        ||||    
T  27531235 ttgtcttgttttgcctgtttttattggtgtggatcctactgatgtgcgacatcacacaggtagatatggtgaagcattagctgtgcataaaaaaaagttt 27531136  T
Q  219 caaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaactt 286  Q
    ||||||||| |||||||||   |||||||||||||||||||||  ||||||||||| || ||||||||    
T  27531135 caaaatgataaggataacactgagaggttgcagcaatggaaagaagctctgagccaagcggctaactt 27531068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 26646526 - 26646669
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||| ||||||||||||||||||| |||||||    
T  26646526 agaatctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaag 26646625  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    |||||  || ||||||| ||||||| ||| ||||| ||| ||||    
T  26646626 ggtcgtctcgttttgcccgttttctatggcgtggatcctactca 26646669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 26752494 - 26752637
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||| ||||||||||||||||||| |||||||    
T  26752494 agaatctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaag 26752593  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    |||||  || ||||||| ||||||| ||| ||||| ||| ||||    
T  26752594 ggtcgtctcgttttgcccgttttctatggcgtggatcctactca 26752637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 31284339 - 31284524
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    |||||||||||||| || |||||||||  ||||||||||||||| |||||||||||||| |||||||| ||||||||||| |  || | |  ||| ||||    
T  31284339 tctaggatttttatccccgtgttttctgccaactatgcctcttcgtcgttttgtttggacgaacttgtccacatcattcacttgtataagcaaaatggtc 31284438  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 206  Q
    || || ||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||  ||||||||||| |||||    
T  31284439 gcctcgttttgcccgttttctttggcgtggatccttctcatgtgcgacatcatagaggtagttatggagaagcattggctaagcat 31284524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 28226997 - 28227174
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||| |||||||| |||||||||||||||| || |  |||     
T  28226997 agaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaat 28227096  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 194  Q
     | ||| |  |||||||  |||||| || ||||||||||||||||||||||||||| || || ||||| |||||||||    
T  28227097 cggcgccttgttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 28227174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 26623027 - 26623166
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    |||||||||||||||||||||||||||  ||||||||| | |||||| |||||||||||||||||||| ||||||||||| |||||||  ||||||||||    
T  26623027 tctaggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtc 26623126  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    |  || ||||||| || |||| ||| ||||| ||| ||||    
T  26623127 gtctcgttttgcccgtcttctatggcgtggatcctactca 26623166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 26729005 - 26729144
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    |||||||||||||||||||||||||||  ||||||||| | |||||| |||||||||||||||||||| ||||||||||| |||||||  ||||||||||    
T  26729005 tctaggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtc 26729104  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    |  || ||||||| || |||| ||| ||||| ||| ||||    
T  26729105 gtctcgttttgcccgtcttctatggcgtggatcctactca 26729144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 28139588 - 28139731
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||| | |||| ||  ||||||    
T  28139588 agaatctaggattttcatccctgtgttttccatcaactatgcctcttcttcgttttgcttggacgaacttgtccacatcattgactgcttcaacacaaag 28139687  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    ||  |  |  ||||||||||||||| ||||||||| ||||||||    
T  28139688 ggatgtttggttttgcctgttttctatggtgtggatccttctca 28139731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 26823891 - 26824021
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||| |||||||| ||||||||||    ||||| |  |||||| |    
T  26823891 tctaggatttttattcctgtgttttctgccaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcgcgtctacaaggaaaaggggc 26823990  T
Q  121 gcgtcattttgcctgttttctttggtgtgga 151  Q
    || || ||||||||||||||| |||||||||    
T  26823991 gcctcgttttgcctgttttctatggtgtgga 26824021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 28242855 - 28243040
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| |||| || || ||| || |    
T  28242855 tctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggac 28242954  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 206  Q
    || |  |||||||  |||||| || ||||||||||||| | ||| ||||||| |  || ||||| ||||||||| |||||||||||    
T  28242955 gcctagttttgccaattttctatgatgtggaaccttctaacgtgagacatcagattggcagttatggtaaagcactggctgagcat 28243040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 25579766 - 25579909
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||||||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  25579766 agaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 25579865  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
     || || |  | ||||| ||||||| || |||||||||| ||||    
T  25579866 agttgcttagtattgcccgttttctatgatgtggaacctactca 25579909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 26656036 - 26656179
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||| ||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| | |||||||    
T  26656036 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaag 26656135  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    ||| |     ||||||||||||||| ||||||||| ||| ||||    
T  26656136 ggttgttcggttttgcctgttttctatggtgtggatcctactca 26656179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 26762007 - 26762150
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||| ||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| | |||||||    
T  26762007 agaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaag 26762106  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    ||| |     ||||||||||||||| ||||||||| ||| ||||    
T  26762107 ggttgttcggttttgcctgttttctatggtgtggatcctactca 26762150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 26048892 - 26049049
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||||||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  26048892 agaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26048991  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcata 174  Q
     || || |  | ||||| ||||| | || |||||||||| ||||  | ||||||||||    
T  26048992 agttgcttagtattgcccgttttttatgatgtggaacctactcacatacgacatcata 26049049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 26070061 - 26070218
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||||||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  26070061 agaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26070160  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcata 174  Q
     || || |  | ||||| ||||| | || |||||||||| ||||  | ||||||||||    
T  26070161 agttgcttagtattgcccgttttttatgatgtggaacctactcacatacgacatcata 26070218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 25481789 - 25481956
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||||||||||| ||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  25481789 agaatctaggatttgtattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 25481888  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagtta 184  Q
     || || |  | || || ||||||| ||||||||| ||| || |||| |||| ||||| | |||||||    
T  25481889 agttgcttagtattacccgttttctatggtgtggatcctactgatgttcgacgtcatacatgtagtta 25481956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 26142912 - 26143011
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||||||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  26142912 agaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26143011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 26342043 - 26341894
Alignment:
Q  48 atcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgaca---aagggtcgcgtcattttgcctgttttctttg 144  Q
    ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| || | ||   |||||||||   |||||||||||||||| ||    
T  26342043 atcaactatgcttcttcttcgttttgtttggacgaacttgtccacatcattcattgcttcaaggcaaagaagggtcgcaaaattttgcctgttttctatg 26341944  T
Q  145 gtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 194  Q
       |||||||||||||||| |||| ||| |  || ||||||||| |||||    
T  26341943 acatggaaccttctcatgtacgacgtcagattgggagttacggtgaagca 26341894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 26848741 - 26848884
Alignment:
Q  51 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 150  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| || |  ||||||| || |  || | |||||||||| |||  | |    
T  26848741 aactatgccacttcttcgttttgtttggacgaacttgtccacatcattcattgctccaaggaaaagggtagcatggttattcctgttttctatggcatag 26848840  T
Q  151 aaccttctcatgtgcgacatcataaaggtagttacggtaaagca 194  Q
    |||||||||||||||||||||| ||  ||||||| ||| |||||    
T  26848841 aaccttctcatgtgcgacatcagaatagtagttatggtgaagca 26848884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 28325532 - 28325717
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| |||||| | || |||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||| |||| ||    ||| || |    
T  28325532 tctaggattttcattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactgcttcaaagaaaatgggc 28325631  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 206  Q
    || |  ||| ||| |||||||  | ||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| ||||||    
T  28325632 gcctagtttagccagttttctacgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 28325717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 25538587 - 25538730
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||| |||||||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| || |||||||| ||||||| |||||||    
T  25538587 agaatctagaatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccagatcattcactgctacaagacaaag 25538686  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
     || || |  | ||||| ||||||| || |||||||||| ||||    
T  25538687 agttgcttagtattgcccgttttctatgatgtggaacctactca 25538730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 26055973 - 26056116
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||| |||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||  ||||||    
T  26055973 agaatctgggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaag 26056072  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
     || || |  | ||||| ||||||| || |||||||||| ||||    
T  26056073 agttgcttagtattgcccgttttctatgatgtggaacctactca 26056116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 26075943 - 26076086
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||| |||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||  ||||||    
T  26075943 agaatctgggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaag 26076042  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
     || || |  | ||||| ||||||| || |||||||||| ||||    
T  26076043 agttgcttagtattgcccgttttctatgatgtggaacctactca 26076086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 28181165 - 28181338
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| |||| || |  ||  || |    
T  28181165 tctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaaggaaagcgggc 28181264  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 194  Q
    |  |  |||||||  |||||| || ||||||||||||||| ||||||||||| || || ||||| |||||||||    
T  28181265 gtctagttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagca 28181338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 28234615 - 28234861
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||| | |||| |  |  |||  | |    
T  28234615 tctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattta-tgcttcgaggaaaatagac 28234713  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttca 220  Q
    || |  |||||||  |||||| || ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| |||        ||| ||    
T  28234714 gcctagttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttcca 28234813  T
Q  221 aaatgatgaggataacataaagaggttgcagcaatggaaagtggctct 268  Q
    |||| |  ||||||||||  ||||||||||| |||||||  |||||||    
T  28234814 aaataacaaggataacatggagaggttgcagaaatggaagatggctct 28234861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 27338201 - 27338050
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| |||||  | ||||||   |||||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||||| ||||| ||||     
T  27338201 tctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggtt 27338102  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatca 172  Q
    |     ||||||||||||||| ||||| ||| ||| |||| || ||||||||    
T  27338101 gttcggttttgcctgttttctatggtgcggatcctactcacgtacgacatca 27338050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 27398941 - 27398790
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| |||||  | ||||||   |||||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||||| ||||| ||||     
T  27398941 tctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggtt 27398842  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatca 172  Q
    |     ||||||||||||||| ||||| ||| ||| |||| || ||||||||    
T  27398841 gttcggttttgcctgttttctatggtgcggatcctactcacgtacgacatca 27398790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 28098502 - 28098320
Alignment:
Q  24 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctac-acgacaaagggtcgc 122  Q
    |||||||| ||||| || || ||||  |||||||| ||||||| ||||||||||||||||||||| |||||||||||  | ||| | || ||||||| ||    
T  28098502 aggattttaattccggtcttctctaagaactatgcttcttctttgttttgtttggatgaacttgtccacatcattcaccgttacgaaga-aaagggttgc 28098404  T
Q  123 gtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 206  Q
     || |||| ||| |||| | ||  |||||||||||||| ||||||||||| |  || ||||| ||| ||||||| ||| |||||    
T  28098403 ttcgtttttcctattttttgtgacgtggaaccttctcacgtgcgacatcagacggggagttatggtgaagcattagctaagcat 28098320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 25507049 - 25506975
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttca 91  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||    ||||||||||| |||||||||||    
T  25507049 agaatctaggatttttattccggttctttctatcaactatgcctcttcaaaattttgtttggaggaacttgttca 25506975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 26937160 - 26937293
Alignment:
Q  36 cctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctg 135  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||| |||||||| |||||| || | |||| || |||||| ||||   | |||||||||     
T  26937160 cctgtattctctatcaactatgccacttcttcattttgtttggacgaacttgtccacatcgttgactgcttcaagacaaaaggtcatctaattttgccta 26937259  T
Q  136 ttttctttggtgtggaaccttctcatgtgcgaca 169  Q
    |||||| ||  ||||| |||||||| || |||||    
T  26937260 ttttctatgaagtggatccttctcacgttcgaca 26937293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 28185417 - 28185590
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| ||||| || || |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||| | |||| || |  ||  || |    
T  28185417 tctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattaactgcttcaaggaaagcgggc 28185516  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 194  Q
    |  |  |||||||  |||||| || ||||||||||||||| ||||||||||| |  || ||||| |||||||||    
T  28185517 gtctagttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacacgggcagttatggtaaagca 28185590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 26635774 - 26635825
Alignment:
Q  54 tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 105  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  26635774 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26635825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 26741740 - 26741791
Alignment:
Q  54 tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 105  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  26741740 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26741791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 28297848 - 28297765
Alignment:
Q  22 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 105  Q
    |||||||||| |||||||| || |||| ||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||    
T  28297848 ctaggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgct 28297765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 28514225 - 28514308
Alignment:
Q  22 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 105  Q
    |||||||||| |||||||| || |||| ||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||    
T  28514225 ctaggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgct 28514308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 26959250 - 26959298
Alignment:
Q  54 tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcatt 102  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  26959250 tatgcttcttcttcgttttatttggatgaacttgtccacatcattcatt 26959298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 27214498 - 27214618
Alignment:
Q  51 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 150  Q
    ||||||||  ||||||| ||||||||||| |||||||| ||||||| |||||||| || |  ||| |||||| |  || | |||||||||| ||| || |    
T  27214498 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaaggaaaaaggtcgccttgttctacctgttttctatggcgttg 27214597  T
Q  151 aaccttctcatgtgcgacatc 171  Q
    ||||||||||  |||||||||    
T  27214598 aaccttctcacttgcgacatc 27214618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 27234730 - 27234610
Alignment:
Q  51 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 150  Q
    ||||||||  ||||||| ||||||||||| |||||||| ||||||| |||||||| || |  ||| |||||| |  || | |||||||||| ||| || |    
T  27234730 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaaggaaaaaggtcgccttgttctacctgttttctatggcgttg 27234631  T
Q  151 aaccttctcatgtgcgacatc 171  Q
    ||||||||||  |||||||||    
T  27234630 aaccttctcacttgcgacatc 27234610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 26975134 - 26975185
Alignment:
Q  52 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattg 103  Q
    ||||||| |||||||| ||||||||||| |||||||| ||||||||||||||    
T  26975134 actatgcttcttcttcattttgtttggacgaacttgtccacatcattcattg 26975185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 28149991 - 28150086
Alignment:
Q  24 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggt 119  Q
    |||||||| |||||  | || |||||||||||| | |||||||| ||||||||||| |||||||| ||||| ||||| |||| || | ||||||||    
T  28149991 aggattttcattccaatcttctctatcaactatacttcttcttcattttgtttggacgaacttgtccacattattcactgcttcaaggcaaagggt 28150086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 27665223 - 27665169
Alignment:
Q  51 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 105  Q
    ||||||||  ||||||| |||||||| ||||||||||| ||||||||||||||||    
T  27665223 aactatgctacttcttcattttgtttagatgaacttgtccacatcattcattgct 27665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 26811590 - 26811711
Alignment:
Q  51 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgg 150  Q
    ||||||||  |||| ||||||||||| ||||| ||||| ||||||||| | | || || |  ||| |||||| |  || | || ||||||| ||||||||    
T  26811590 aactatgcaacttcgtcgttttgtttagatgagcttgtccacatcattaactacttcaaggaaaaaggtcgccttgttctaccagttttctatggtgtgg 26811689  T
Q  151 aaccttctcatgtgcgacatca 172  Q
    |||||||||| |||||||||||    
T  26811690 aaccttctcacgtgcgacatca 26811711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 2184369 - 2184417
Alignment:
Q  51 aactatgcctcttcttcgttttgtttggatgaacttgttcacatcattc 99  Q
    |||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  2184369 aactatgcttcttcttcattttgtttggacgaacttgtccacatcattc 2184417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 29826102 - 29826229
Alignment:
Q  45 tctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttg 144  Q
    |||| ||| ||||| |||||||||||||| || ||||||||||| || ||  || | ||   || ||  ||||||||  || |||||||| |||||| ||    
T  29826102 tctaccaattatgcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatg 29826201  T
Q  145 gtgtggaaccttctcatgtgcgacatca 172  Q
     |||||| ||||||||||||||||||||    
T  29826202 atgtggatccttctcatgtgcgacatca 29826229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 2184980 - 2185046
Alignment:
Q  52 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaaggg 118  Q
    ||||||| |||||||| ||||||||||| |||||||| || ||||||| ||||| || | |||||||    
T  2184980 actatgcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 2185046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 26646755 - 26646817
Alignment:
Q  246 ttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 308  Q
    ||||| ||||||||  ||||||||| ||| ||||||||||| ||||| |||||| ||||||||    
T  26646755 ttgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcct 26646817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 26752723 - 26752785
Alignment:
Q  246 ttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 308  Q
    ||||| ||||||||  ||||||||| ||| ||||||||||| ||||| |||||| ||||||||    
T  26752723 ttgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcct 26752785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 26949745 - 26949863
Alignment:
Q  54 tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtggaac 153  Q
    ||||| |||||||| |||||||| || |||||||| || |||||||| | || || |  ||| |||||| |  || |||| ||||||| || ||| ||||    
T  26949745 tatgcttcttcttcattttgtttagacgaacttgtccatatcattcactacttcaaggaaaaaggtcgccttgttctgccagttttctatgatgtagaac 26949844  T
Q  154 cttctcatgtgcgacatca 172  Q
    ||||||| |||||||||||    
T  26949845 cttctcacgtgcgacatca 26949863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 25071741 - 25071789
Alignment:
Q  52 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattca 100  Q
    ||||||| |||||||| |||||||| || |||||||| |||||||||||    
T  25071741 actatgcttcttcttcattttgtttagacgaacttgtccacatcattca 25071789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 3561 - 3265
Alignment:
Q  18 gaatctaggatttttattcctgtgttttctatcaac-tatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  3561 gaatctaggatttttattcctgtgttttctatcaacctatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 3462  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    |||||| || || |||||||||| ||||||||||||||| ||  ||||||||||| |||||||||||| ||| |||||||||||||||||       |||    
T  3461 ggtcgcctcgttctgcctgttttatttggtgtggaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaagaggt 3362  T
Q  217 ttcaaaatgatgag-gataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 312  Q
    |||||||||||  |  | |||||  |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3361 ttcaaaatgatccgaaaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 3265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 14494 - 14201
Alignment:
Q  18 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||    
T  14494 gaatctaggatttttattcctgtgttttctatcaactatgcct-ttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 14396  T
Q  118 gtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtt 217  Q
    ||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||       ||||    
T  14395 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaagaggtt 14296  T
Q  218 tcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 312  Q
    ||||||||||  | | |||||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14295 tcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 14201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 4810 - 4529
Alignment:
Q  18 gaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagg 117  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||    
T  4810 gaatctaggatttttattcctgtgttttctatcttctatgccttttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagg 4711  T
Q  118 gtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtt 217  Q
    ||||| || |||||||||||||||| || ||||||||| || | ||||||||||  ||||||||||| ||| |||||||||||||||||       ||||    
T  4710 gtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatctgaaaggtagttatggtgaagcattggctgagcatgaaaagaggtt 4611  T
Q  218 tcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 299  Q
    |||||||||| || |||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  4610 tcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 13772 - 13490
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||    ||||| ||||| |||||||||||||| ||||||||||||| ||||||     
T  13772 agaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaa 13673  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| |||| |||| ||| ||||||||||||  |||       |||    
T  13672 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggt 13573  T
Q  217 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 299  Q
    ||||||||||| || |||||||  || | ||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  13572 ttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 13490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 7572 - 7854
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||    ||||| ||||| |||||||||||||| ||||||||||||| |||| |     
T  7572 agaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagacagaa 7671  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| |||| |||| ||| ||||||||||||  |||       |||    
T  7672 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggt 7771  T
Q  217 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 299  Q
    ||||||||||| || |||||||  || | ||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  7772 ttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 7854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 59617 - 59902
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||| |||||||| |||||  | ||||||  ||||||||| |||||||| | |||||||||   |||||| ||||||||||| |||||||  || |||    
T  59617 agaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaag 59716  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    ||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||||||||||||||||       |||    
T  59717 ggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaataggt 59816  T
Q  217 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 302  Q
    |||||||||||  | | |||||  ||||||||||||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  59817 ttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 59902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 18073809 - 18074094
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||| |||||||| |||||  | ||||||  ||||||||| |||||||| | |||||||||   |||||| ||||||||||| |||||||  || |||    
T  18073809 agaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaag 18073908  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 216  Q
    ||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||||||||||||||||       |||    
T  18073909 ggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaataggt 18074008  T
Q  217 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 302  Q
    |||||||||||  | | |||||  ||||||||||||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  18074009 ttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 18074094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 18699523 - 18699403
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| ||||    
T  18699523 tctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgttcacatcattcactgctacaagacaaaaggtc 18699424  T
Q  121 gcgtcattttgcctgttttct 141  Q
    |  || |||||||||||||||    
T  18699423 gtctcgttttgcctgttttct 18699403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 18655600 - 18655461
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||| ||||||| |||||||||||    
T  18655600 tctaggatctttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccgcatcattcactgctacaagacaaagggtc 18655501  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    |  || |||| |||||||||| ||| ||||| ||| ||||    
T  18655500 gtctcgtttttcctgttttctatggcgtggatcctactca 18655461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 18679690 - 18679570
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||||||    
T  18679690 tctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtc 18679591  T
Q  121 gcgtcattttgcctgttttct 141  Q
    |  |  |||||||||||||||    
T  18679590 gtcttgttttgcctgttttct 18679570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 18731627 - 18731497
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||| |||||||||||    
T  18731627 tctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcatgcactgctacaagacaaagggtc 18731528  T
Q  121 gcgtcattttgcctgttttctttggtgtgga 151  Q
    |  |  ||||||||||||||| ||| |||||    
T  18731527 gtcttgttttgcctgttttctatggcgtgga 18731497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 18724208 - 18724078
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| || ||||||| |||||||||||    
T  18724208 tctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttgaacgaacttgtccacatcatgcactgctacaagacaaagggtc 18724109  T
Q  121 gcgtcattttgcctgttttctttggtgtgga 151  Q
    |  |  ||||||||||||||| ||| |||||    
T  18724108 gtcttgttttgcctgttttctatggcgtgga 18724078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 5091059 - 5090905
Alignment:
Q  52 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttttctttggtgtgga 151  Q
    ||||||| ||||||||||||||||| ||||||||||| || || ||||| |||| || |  ||| ||| || |  |||||||| |||||| |||||||||    
T  5091059 actatgcttcttcttcgttttgtttagatgaacttgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctatggtgtgga 5090960  T
Q  152 accttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 206  Q
    |||||||||||||||| |||| |  || ||||| ||| ||||| | |||||||||    
T  5090959 accttctcatgtgcgatatcagactggaagttatggtgaagcacttgctgagcat 5090905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 17989180 - 17989019
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    |||||| |||||||| |||||  | ||||||  ||||||||| |||||||| | |||||||||   |||||| ||||||||||| |||||||   ||  |    
T  17989180 agaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaacca--g 17989083  T
Q  117 ggtcgcgtcattttgcct-gttttctttggtgtggaaccttctcatgtgcgacatcataaaggtag 181  Q
    |||  | || |||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  17989082 ggttcc-tcgttttgccttgttttctttggtgtggaacc-tctgatgtgcgacatcatacaggtag 17989019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 18655377 - 18655313
Alignment:
Q  244 ggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 308  Q
    ||||||| ||||||||  ||||||||| | | ||||||||||| ||||||||||||  |||||||    
T  18655377 ggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattctagtcct 18655313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 18723985 - 18723921
Alignment:
Q  244 ggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 308  Q
    ||||||| ||||||||  ||||||||| | | ||||||||||| ||||||||||||  |||||||    
T  18723985 ggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcct 18723921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 28127806 - 28127639
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  28127806 agaatctagaatttttattcctgtattttctaccaactatgcctcttcttcattttgtttggacgaacttgtgcacatcattcactgctacaagacaaag 28127707  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagtta 184  Q
    |||||| |  ||||||||||||||||||| ||||| ||| || |||||||| |||||| ||| |||||    
T  28127706 ggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagtta 28127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 28164479 - 28164323
Alignment:
Q  27 atttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtca 126  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||| |      
T  28164479 atttttattcctgtgttatctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctag 28164380  T
Q  127 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagtta 184  Q
    |||||||||||||| |||| ||||| ||| || ||||||||||||||| ||| |||||    
T  28164379 ttttgcctgttttc-ttggcgtggatcctactgatgtgcgacatcatacagggagtta 28164323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 268480 - 268341
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| || ||||||||    
T  268480 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagaaaaagggtc 268381  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    |  |||||||||| || |||| ||| ||||| ||| ||||    
T  268380 gtctcattttgcccgtcttctatggcgtggatcctactca 268341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 29273906 - 29273767
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||||||||    
T  29273906 tctagaatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtc 29273807  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctca 160  Q
    |  ||||||||||||| |||| ||| ||||| ||| ||||    
T  29273806 gtctcattttgcctgtcttctatggcgtggatcctactca 29273767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 27495 - 27672
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaag 116  Q
    ||||||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||| |||||||| |||||||||||||||| || |  |||     
T  27495 agaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaat 27594  T
Q  117 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 194  Q
     | ||| |  |||||||  |||||| || ||||||||||||||||||||||||||| || || ||||| |||||||||    
T  27595 cggcgccttgttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 27672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 43017 - 43202
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| |||| || || ||| || |    
T  43017 tctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggac 43116  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 206  Q
    || |  |||||||  |||||| || ||||||||||||| | ||| ||||||| |  || ||||| ||||||||| |||||||||||    
T  43117 gcctagttttgccaattttctatgatgtggaaccttctaacgtgagacatcagattggcagttatggtaaagcactggctgagcat 43202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 34776 - 35023
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| |||| || |  ||  || |    
T  34776 tctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaaggaaagcgggc 34875  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttca 220  Q
    |  |  |||||||  |||||| || ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| |||        ||| ||    
T  34876 gtctagttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttcca 34975  T
Q  221 aaatgatgaggataacataaagaggttgcagcaatggaaagtggctct 268  Q
    |||| |  ||||||||||  ||||||||||| |||||||  |||||||    
T  34976 aaataacaaggataacatggagaggttgcagaaatggaagatggctct 35023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 116847 - 117032
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| |||||| | || |||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||| |||| ||    ||| || |    
T  116847 tctaggattttcattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactgcttcaaagaaaatgggc 116946  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 206  Q
    || |  ||| ||| |||||||  | ||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| ||||||    
T  116947 gcctagtttagccagttttctacgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 117032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 3279744 - 3279823
Alignment:
Q  26 gatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 105  Q
    |||||||||||| || || |||||||||||||| ||||||   ||||||||||| |||||||| ||||||||||||||||    
T  3279744 gatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcattgct 3279823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 17993789 - 17993736
Alignment:
Q  52 actatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgct 105  Q
    ||||||| |||||||| |||||||| || |||||||| ||||||||||| ||||    
T  17993789 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcaatgct 17993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 58418 - 58245
Alignment:
Q  21 tctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtc 120  Q
    ||||||||||| ||||| || || |||||||||||||| |||||||| ||||| ||| | |||||||| ||||||||||| |||| |  |  | | || |    
T  58418 tctaggattttcattcccgtcttgtctatcaactatgcttcttcttcattttgcttgaacgaacttgtccacatcattcactgcttcgaggaatatgggc 58319  T
Q  121 gcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 194  Q
    || |  |||||||  |||||| ||  |||||||||||||| |||||||||||  | || ||||| |||||||||    
T  58318 gcctagttttgccaattttctatgacgtggaaccttctcacgtgcgacatcaagatggaagttatggtaaagca 58245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 57 - 10
Alignment:
Q  17 agaatctaggatttttattcctgtgttttctatcaactatgcctcttc 64  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  57 agaatctaggatttttattcctgtgttttctatcaactacgccacttc 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 16689080 - 16689213
Alignment:
Q  39 gtgttttctatcaactatgcctcttcttcgttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcattttgcctgttt 138  Q
    ||||||||||  |||||||| | ||| |||||||||||||||||||||||  |||||||| || ||| ||   |||| |||||  |  ||||||||||||    
T  16689080 gtgttttctaagaactatgcattttcctcgttttgtttggatgaacttgtcaacatcattgatggcttcagtgcaaaaggtcggctagttttgcctgttt 16689179  T
Q  139 tctttggtgtggaaccttctcatgtgcgacatca 172  Q
    ||| ||  ||||| ||||| |||||| |||||||    
T  16689180 tctatgacgtggatccttcgcatgtgagacatca 16689213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University