View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10289_high_8 (Length: 270)

Name: NF10289_high_8
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10289_high_8
NF10289_high_8
[»] chr8 (11 HSPs)
chr8 (3-116)||(28707875-28707997)
chr8 (147-213)||(28723124-28723190)
chr8 (147-213)||(28730766-28730832)
chr8 (155-212)||(28707773-28707830)
chr8 (212-245)||(28707290-28707323)
chr8 (3-44)||(28723315-28723356)
chr8 (3-44)||(28730957-28730998)
chr8 (212-247)||(28723054-28723089)
chr8 (212-247)||(28730696-28730731)
chr8 (15-44)||(28736575-28736604)
chr8 (12-44)||(28623715-28623747)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 28707997 - 28707875
Alignment:
Q  3 tgtaatttctgggttatggagttctttaagtaaagaacatgtactagtgttctttgg---------gtggatttattaccaactaaacttgggtttagta 93  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         |||||| ||||||||||||||||||||| |||||    
T  28707997 tgtaatttctgggttatggagttctttaagtaatgaacatgtactagtgttctttggtgtctttgggtggatctattaccaactaaacttgggtatagta 28707898  T
Q  94 ctatttgtactcctttctatttt 116  Q
    |||||||||||||||||||||||    
T  28707897 ctatttgtactcctttctatttt 28707875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 28723190 - 28723124
Alignment:
Q  147 aaaaaactagtgctgctgtatgggatcgaagttctttcgaacagggttaattgtttgcttattacaa 213  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||||| |||||    
T  28723190 aaaaaactagtgttgctgtatgggatcgaagttctttcgactagggttacttgtttgcttactacaa 28723124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 28730832 - 28730766
Alignment:
Q  147 aaaaaactagtgctgctgtatgggatcgaagttctttcgaacagggttaattgtttgcttattacaa 213  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||||| |||||    
T  28730832 aaaaaactagtgttgctgtatgggatcgaagttctttcgactagggttacttgtttgcttactacaa 28730766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 28707830 - 28707773
Alignment:
Q  155 agtgctgctgtatgggatcgaagttctttcgaacagggttaattgtttgcttattaca 212  Q
    ||||||||| |||||||||||||||||||| ||  |||||| ||||||||||||||||    
T  28707830 agtgctgctatatgggatcgaagttctttcaaattgggttacttgtttgcttattaca 28707773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 28707323 - 28707290
Alignment:
Q  212 aaatatttaaattacatatgtatcgaagttctct 245  Q
    ||||||||||||||||||||||||||||||||||    
T  28707323 aaatatttaaattacatatgtatcgaagttctct 28707290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 28723356 - 28723315
Alignment:
Q  3 tgtaatttctgggttatggagttctttaagtaaagaacatgt 44  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  28723356 tgtaatttttgggttatggagttctttaagtaaagagcatgt 28723315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 28730998 - 28730957
Alignment:
Q  3 tgtaatttctgggttatggagttctttaagtaaagaacatgt 44  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  28730998 tgtaatttttgggttatggagttctttaagtaaagagcatgt 28730957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 28723089 - 28723054
Alignment:
Q  212 aaatatttaaattacatatgtatcgaagttctctct 247  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28723089 aaatatttaaattacatatgtattgaagttctctct 28723054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 28730731 - 28730696
Alignment:
Q  212 aaatatttaaattacatatgtatcgaagttctctct 247  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28730731 aaatatttaaattacatatgtattgaagttctctct 28730696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 28736604 - 28736575
Alignment:
Q  15 gttatggagttctttaagtaaagaacatgt 44  Q
    ||||||||||||||||||||||||||||||    
T  28736604 gttatggagttctttaagtaaagaacatgt 28736575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 28623747 - 28623715
Alignment:
Q  12 tgggttatggagttctttaagtaaagaacatgt 44  Q
    ||||||||||||||||||||||||||| |||||    
T  28623747 tgggttatggagttctttaagtaaagagcatgt 28623715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University