View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10289_low_12 (Length: 268)
Name: NF10289_low_12
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10289_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 2322971 - 2322725
Alignment:
| Q |
5 |
agactagattaactgtccaggtatgtacttgtaaaacaaaacaatctcacacttttccatatttatccttcttcaaaatttaagttggtgggcacttttt |
104 |
Q |
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| T |
2322971 |
agactagattaactgtccaggtatgtacttgtaaaacaaaacaatctcacacttttccatatttatccttcttcaaaatttaagttggtgggcacttttt |
2322872 |
T |
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| Q |
105 |
acagagaggtgtttataacggtctatttgacgcgttcgtgaaaataattcgagaagagggtgcttcagaactttacagaggccttgcacctagtcttatt |
204 |
Q |
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| T |
2322871 |
acagagaggtgtttataacggtctatttgacgcgttcgtgaaaataattcgagaagagggtgcttcagaactttacagaggccttgcacctagtcttatt |
2322772 |
T |
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| Q |
205 |
ggagtcattccatattctgctaccaactactttgcctatgacacttt |
251 |
Q |
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| T |
2322771 |
ggagtcattccatattctgctaccaactactttgcctatgacacttt |
2322725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 249
Target Start/End: Original strand, 49587209 - 49587352
Alignment:
| Q |
106 |
cagagaggtgtttataacggtctatttgacgcgttcgtgaaaataattcgagaagagggtgcttcagaactttacagaggccttgcacctagtcttattg |
205 |
Q |
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|||||||||||||| || ||||| ||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
49587209 |
cagagaggtgtttacaatggtctccttgacgctttcgtgaaaataattaaagaagagggccctgcagaactttacagaggcctgacacctagtcttattg |
49587308 |
T |
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| Q |
206 |
gagtcattccatattctgctaccaactactttgcctatgacact |
249 |
Q |
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| T |
49587309 |
gagttattccatattcggctaccaattactttgcctacgacact |
49587352 |
T |
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