View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10289_low_15 (Length: 253)

Name: NF10289_low_15
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10289_low_15
NF10289_low_15
[»] chr1 (7 HSPs)
chr1 (1-246)||(47640541-47640786)
chr1 (74-153)||(6525296-6525375)
chr1 (72-195)||(6497783-6497906)
chr1 (72-183)||(47287582-47287693)
chr1 (72-152)||(6510737-6510817)
chr1 (74-152)||(47593063-47593141)
chr1 (112-152)||(6515167-6515207)
[»] scaffold0341 (1 HSPs)
scaffold0341 (72-152)||(12417-12497)
[»] scaffold0007 (1 HSPs)
scaffold0007 (80-152)||(7162-7234)
[»] chr6 (6 HSPs)
chr6 (80-152)||(18991047-18991119)
chr6 (80-152)||(21968265-21968337)
chr6 (80-152)||(22086149-22086221)
chr6 (80-152)||(22206841-22206913)
chr6 (80-193)||(18995770-18995883)
chr6 (80-152)||(18979695-18979767)
[»] chr5 (1 HSPs)
chr5 (72-153)||(28854669-28854750)
[»] chr8 (1 HSPs)
chr8 (80-152)||(10401678-10401750)
[»] chr4 (1 HSPs)
chr4 (71-159)||(36290560-36290648)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 47640786 - 47640541
Alignment:
Q  1 aaggcatgaaacttactaagtccctactatccttcctgtatttacttgagtctgatctggctggaaaatttttgccatcccaaaatctgaaatctttggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47640786 aaggcatgaaacttactaagtccctactatccttcctgtatttacttgagtctgatctggctggaaaatttttgccatcccaaaatctgaaatctttggg 47640687  T
Q  101 ttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttcgtgtagataaagaatccctcgagcgatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47640686 ttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttcgtgtagataaagaatccctcgagcgatgc 47640587  T
Q  201 caactataatcttatagcgactagaccaatctaactccctttgctt 246  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  47640586 caactataatcttatggcgactagaccaatctaactccctttgctt 47640541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 6525375 - 6525296
Alignment:
Q  74 gccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataat 153  Q
    ||||| ||||||||||  ||||| || ||||| | ||||||||| |||| |||||| |||||||||||||||||||||||    
T  6525375 gccatgccaaaatctgctatcttaggattcatctcttcatctaagagaatattgcttgctttgagatcacgatgaataat 6525296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 6497783 - 6497906
Alignment:
Q  72 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttc 171  Q
    ||||||| |||||||| || ||||| || ||||| | ||||||||| ||||  || || ||||||||||||||||||||||| |  ||| | || || ||    
T  6497783 ttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaatcctc 6497882  T
Q  172 gtgtagataaagaatccctcgagc 195  Q
    ||| || |||||||| ||||||||    
T  6497883 gtgaaggtaaagaatgcctcgagc 6497906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 47287693 - 47287582
Alignment:
Q  72 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttc 171  Q
    |||||||||||||||||||||| || || || | ||| ||||||||||  | ||| || ||||| ||||| ||||| || ||||||||| | || |||||    
T  47287693 ttgccatcccaaaatctgaaattttgggatttaaattctcatctaataatatattactagctttaagatcgcgatgtatgattctaagtcgagaatcttc 47287594  T
Q  172 gtgtagataaag 183  Q
    ||| ||||||||    
T  47287593 gtgaagataaag 47287582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 6510737 - 6510817
Alignment:
Q  72 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    ||||||| |||||||| |  ||||| || ||||| | |||||| || |||| |||||| ||||||||||||||||||||||    
T  6510737 ttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataa 6510817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 47593141 - 47593063
Alignment:
Q  74 gccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    ||||| ||||||||||| || || || |||||||||||||| | ||||||||| || | ||||||||| ||||| ||||    
T  47593141 gccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataa 47593063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 6515167 - 6515207
Alignment:
Q  112 atctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  6515167 atctaagagaatattgcttgctttgagatcacgatgaataa 6515207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 12417 - 12497
Alignment:
Q  72 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    ||||||| |||||||| |  ||||| || ||||| | |||||| || |||| |||||| ||||||||||||||||||||||    
T  12417 ttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataa 12497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 7234 - 7162
Alignment:
Q  80 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    |||||||||||||| || ||  |||||||||| |||||||||| |||||| | ||||||||| ||||| ||||    
T  7234 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataa 7162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 18991047 - 18991119
Alignment:
Q  80 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    |||||||||||||| || ||  |||||||||| |||||||||| |||||| | ||||||||| ||||| ||||    
T  18991047 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataa 18991119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 21968265 - 21968337
Alignment:
Q  80 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    |||||||||||||| || ||  ||||||||||||||||||||| ||| || | ||||||||| ||||| ||||    
T  21968265 ccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataa 21968337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 22086149 - 22086221
Alignment:
Q  80 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    ||||||||||||||  | ||  ||||||||||||||||||||| ||| || | ||||||||||||||| ||||    
T  22086149 ccaaaatctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataa 22086221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 22206913 - 22206841
Alignment:
Q  80 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    |||||||| ||||| || ||  ||||||||||||||||||||| |||||| | ||||||||| ||||| ||||    
T  22206913 ccaaaatcagaaattttaggaatcatattttcatctaatagaatattgctaggtttgagatcccgatgtataa 22206841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 18995770 - 18995883
Alignment:
Q  80 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttcgtgtagat 179  Q
    |||||||||||||| || ||  |||||||||| | |||||||| |||||| | ||||||||| ||||| |||| | | ||| | || | ||| || | ||    
T  18995770 ccaaaatctgaaattttaggaatcatattttcgtataatagaatattgctaggtttgagatcccgatgtataacttttagtcgagaatgttcatgcaaat 18995869  T
Q  180 aaagaatccctcga 193  Q
    ||||||||||||||    
T  18995870 aaagaatccctcga 18995883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 18979695 - 18979767
Alignment:
Q  80 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    |||||||||||||| || ||  |||||||||| |||||||||| |||||| | ||||| ||| ||||| ||||    
T  18979695 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgacatcccgatgtataa 18979767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 28854669 - 28854750
Alignment:
Q  72 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataat 153  Q
    ||||||| || |||||||| ||||| |  ||||| ||||||||||| |||| |||||  |||||||||||||| || |||||    
T  28854669 ttgccatgccgaaatctgatatcttagcattcatgttttcatctaagagaatattgcctgctttgagatcacggtgtataat 28854750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 10401678 - 10401750
Alignment:
Q  80 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 152  Q
    ||||||||||| || |||||  |||||||||||||||||| || ||| || | |||||| ||||| |||||||    
T  10401678 ccaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgaggtcacggtgaataa 10401750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 36290648 - 36290560
Alignment:
Q  71 tttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaag 159  Q
    |||||||  ||||| |||||||| ||||| |||||||||||||| || | ||  ||||| ||||| ||||| ||||| || ||||||||    
T  36290648 tttgccaagccaaagtctgaaatttttggattcatattttcatccaacaaaatgttgcttgcttttagatctcgatggattattctaag 36290560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University