View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10289_low_16 (Length: 252)
Name: NF10289_low_16
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10289_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 2323031 - 2323275
Alignment:
| Q |
1 |
accaatgacggagaaattgggatttttggcttttccccgggctttgatgagaggttcttcttaactgtatcataagcaaatagctgcagaaaagaaagnn |
100 |
Q |
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| T |
2323031 |
accaatgacggagaaattgggatttttggcttttccccgggctttgatgagaggttcttcttaactgtatcataagcaaatagctgcagaaaagaaagaa |
2323130 |
T |
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| Q |
101 |
nnnnnn-cagcaatatattcagatgcatnnnnnnnntgctggagttaaatctatgatcatggggattattaaattactaatagaagacaaaacaaaatgt |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2323131 |
aaaaaaacagcaatatattcagatgcataaaaaaaatgctggagttaaatctatgatcatggggattattaaattactaatagaagacaaaacaaaatgt |
2323230 |
T |
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| Q |
200 |
ctaaaaacagttaaaatactaccacatacaaccagacttcatctc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2323231 |
ctaaaaacagttaaaatactaccacatacaaccagacttcatctc |
2323275 |
T |
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