View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10289_low_19 (Length: 249)
Name: NF10289_low_19
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10289_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 44125257 - 44125477
Alignment:
| Q |
13 |
ggacgttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc |
112 |
Q |
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| T |
44125257 |
ggactttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc |
44125356 |
T |
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| Q |
113 |
agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgttggtggtggtcggaggttctgctccggtggcggttgttgaacggagattg |
212 |
Q |
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| T |
44125357 |
agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgttggtggtggtcggaggttctgctccggtggcggttgtcgaacggagattg |
44125456 |
T |
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| Q |
213 |
gagaatgtggcggcgaagaag |
233 |
Q |
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| T |
44125457 |
gagaatgtggctgcgaagaag |
44125477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 50037123 - 50037272
Alignment:
| Q |
13 |
ggacgttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc |
112 |
Q |
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| T |
50037123 |
ggactttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc |
50037222 |
T |
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| Q |
113 |
agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgt |
162 |
Q |
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| T |
50037223 |
agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgt |
50037272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 50044345 - 50044494
Alignment:
| Q |
13 |
ggacgttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc |
112 |
Q |
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| T |
50044345 |
ggactttggagaagcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtc |
50044444 |
T |
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| Q |
113 |
agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgt |
162 |
Q |
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| T |
50044445 |
agggtagagtgttgcgttgcaacttgaacggatgaattcggcgtcgtcgt |
50044494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 50037274 - 50037316
Alignment:
| Q |
191 |
ggcggttgttgaacggagattggagaatgtggcggcgaagaag |
233 |
Q |
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| T |
50037274 |
ggcggttgttgaacggagattggagaatgtggtggcgaagaag |
50037316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 50044496 - 50044538
Alignment:
| Q |
191 |
ggcggttgttgaacggagattggagaatgtggcggcgaagaag |
233 |
Q |
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| T |
50044496 |
ggcggttgttgaacggagattggagaatgtggtggcgaagaag |
50044538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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