View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10289_low_20 (Length: 247)
Name: NF10289_low_20
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10289_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26582531 - 26582302
Alignment:
| Q |
1 |
tattgatttagtaaagtttatatgtctaacttcatataagttaaaagttgagcatgaataattgatttagcaaaggtatcacatttgtagtaagttcaca |
100 |
Q |
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| T |
26582531 |
tattgatttagtaaagtttatatgtctaacttcatataagttaaaagttgatcatgaataattgatttagcaaaggtatcacatttgtagtaagttcaca |
26582432 |
T |
|
| Q |
101 |
ctaatgttttatgcatgttgtagtnnnnnnngcatgataataattttcaagtagttgtccaatgattggattattgatggtcgatttaacatatatacta |
200 |
Q |
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| T |
26582431 |
ctaatgttttatgcatgttgtagtaaaaaaa--atgataataattttcgagtagttgtccaatgattggattattgatggtcgatttaacatatatacta |
26582334 |
T |
|
| Q |
201 |
aattatattgtcatcgcgttgtaatatttata |
232 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
26582333 |
aattatattgtcatcgtgttgtaatatttata |
26582302 |
T |
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