View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10289_low_22 (Length: 239)
Name: NF10289_low_22
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10289_low_22 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 6365731 - 6365533
Alignment:
| Q |
41 |
ttatttatgtaatgagccagcttatattacccatcttcatttaaacgtgttgttatttagtaaattaattatgtaaaaaacatataataatgaacaataa |
140 |
Q |
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| T |
6365731 |
ttatttatgtaatgtgccagcttatattacccatcttcatttaaatgtgttgttatttagtaaattaattatgtaaaaaacatataataatgaacaataa |
6365632 |
T |
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| Q |
141 |
acaattatttcttttgaactaaccttgcacctatcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaa |
239 |
Q |
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| T |
6365631 |
acaattatttcttttgaactaaccttgcacctatcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaa |
6365533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 7463269 - 7463204
Alignment:
| Q |
174 |
tcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaa |
239 |
Q |
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|||||||||||| |||||||||| |||| |||| |||| ||||| || |||||||||||||||||| |
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| T |
7463269 |
tcaactactatagatactaagcacccccatggttacaagacacaggcatttctttcatttaccaaa |
7463204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 6356169 - 6356105
Alignment:
| Q |
173 |
atcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttacca |
237 |
Q |
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||||||||||||||||||||| || ||| |||| |||| |||||||| |||||||||||||||| |
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| T |
6356169 |
atcaactactataaatactaaccacccctatggttacaagacacaagcctttctttcatttacca |
6356105 |
T |
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