View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10289_low_5 (Length: 407)

Name: NF10289_low_5
Description: NF10289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10289_low_5
NF10289_low_5
[»] chr8 (18 HSPs)
chr8 (250-400)||(36731977-36732131)
chr8 (235-400)||(39861544-39861713)
chr8 (243-400)||(25128588-25128749)
chr8 (268-396)||(5882308-5882437)
chr8 (268-396)||(17450556-17450684)
chr8 (294-400)||(25191402-25191509)
chr8 (307-396)||(25129263-25129353)
chr8 (307-396)||(5881201-5881291)
chr8 (244-398)||(29266165-29266323)
chr8 (273-396)||(36731375-36731497)
chr8 (306-400)||(37437963-37438058)
chr8 (268-328)||(39130994-39131054)
chr8 (306-398)||(29361882-29361975)
chr8 (268-396)||(39860991-39861119)
chr8 (248-398)||(5332068-5332222)
chr8 (243-387)||(42987383-42987530)
chr8 (248-398)||(5330901-5331055)
chr8 (243-389)||(42986648-42986798)
[»] chr1 (33 HSPs)
chr1 (243-400)||(21790752-21790913)
chr1 (243-400)||(29858924-29859079)
chr1 (268-396)||(47052374-47052503)
chr1 (268-400)||(44233237-44233370)
chr1 (235-400)||(16960020-16960188)
chr1 (235-400)||(46284748-46284917)
chr1 (235-396)||(27651326-27651490)
chr1 (243-394)||(14886154-14886309)
chr1 (243-396)||(14886726-14886883)
chr1 (268-396)||(48302089-48302218)
chr1 (235-398)||(42986750-42986917)
chr1 (272-394)||(26897033-26897156)
chr1 (243-398)||(2271229-2271388)
chr1 (277-396)||(6690339-6690459)
chr1 (268-396)||(27651998-27652126)
chr1 (243-396)||(16959505-16959661)
chr1 (243-396)||(46285443-46285600)
chr1 (272-400)||(6690984-6691112)
chr1 (277-376)||(26896507-26896607)
chr1 (279-396)||(29859561-29859679)
chr1 (235-396)||(21791380-21791543)
chr1 (285-393)||(48301913-48302022)
chr1 (243-398)||(39848772-39848931)
chr1 (243-398)||(39847810-39847968)
chr1 (243-398)||(47374738-47374897)
chr1 (294-400)||(44234556-44234663)
chr1 (235-400)||(26212912-26213081)
chr1 (268-393)||(42986982-42987108)
chr1 (272-392)||(10716705-10716826)
chr1 (243-392)||(7011966-7012119)
chr1 (243-396)||(5216563-5216718)
chr1 (306-398)||(47374112-47374205)
chr1 (243-398)||(7012930-7013089)
[»] chr6 (9 HSPs)
chr6 (235-400)||(19653757-19653926)
chr6 (235-396)||(8993481-8993646)
chr6 (235-396)||(9017928-9018093)
chr6 (243-394)||(8992909-8993064)
chr6 (243-394)||(9017356-9017511)
chr6 (243-396)||(18649796-18649952)
chr6 (243-346)||(19651073-19651179)
chr6 (238-346)||(9280840-9280951)
chr6 (243-396)||(32907429-32907584)
[»] chr2 (22 HSPs)
chr2 (48-240)||(4446370-4446564)
chr2 (235-400)||(19386289-19386457)
chr2 (248-400)||(121311-121467)
chr2 (243-396)||(122851-123008)
chr2 (235-396)||(20202644-20202808)
chr2 (235-396)||(8911160-8911323)
chr2 (243-396)||(8911734-8911890)
chr2 (243-396)||(4776249-4776406)
chr2 (268-396)||(19386816-19386944)
chr2 (243-398)||(39629409-39629568)
chr2 (270-396)||(20203197-20203323)
chr2 (277-400)||(44929021-44929145)
chr2 (284-396)||(38956050-38956162)
chr2 (235-398)||(42848711-42848878)
chr2 (243-398)||(42849393-42849552)
chr2 (243-389)||(44926643-44926794)
chr2 (233-398)||(13327736-13327905)
chr2 (306-398)||(39628805-39628898)
chr2 (248-398)||(13328706-13328860)
chr2 (316-397)||(4776905-4776987)
chr2 (243-400)||(38273553-38273714)
chr2 (306-398)||(2477851-2477944)
[»] chr3 (22 HSPs)
chr3 (243-396)||(41710093-41710250)
chr3 (243-400)||(51827564-51827725)
chr3 (272-394)||(41709553-41709676)
chr3 (248-400)||(28907893-28908048)
chr3 (268-396)||(51829382-51829511)
chr3 (243-396)||(53948662-53948818)
chr3 (243-396)||(53949211-53949367)
chr3 (243-396)||(30834328-30834485)
chr3 (237-396)||(28908547-28908710)
chr3 (268-346)||(43400716-43400794)
chr3 (240-359)||(53948506-53948629)
chr3 (243-396)||(38798254-38798410)
chr3 (271-398)||(53949371-53949499)
chr3 (235-400)||(11238510-11238677)
chr3 (243-398)||(47169052-47169211)
chr3 (243-398)||(47167889-47168048)
chr3 (243-398)||(53949972-53950131)
chr3 (315-400)||(30833747-30833832)
chr3 (235-393)||(24485855-24486007)
chr3 (243-332)||(20200570-20200662)
chr3 (243-332)||(20202754-20202846)
chr3 (246-302)||(30833686-30833745)
[»] chr7 (26 HSPs)
chr7 (243-394)||(26774573-26774724)
chr7 (235-400)||(43334620-43334788)
chr7 (268-396)||(3474932-3475061)
chr7 (235-400)||(3163391-3163559)
chr7 (243-396)||(26773996-26774153)
chr7 (268-400)||(30469994-30470126)
chr7 (243-394)||(3475469-3475624)
chr7 (268-396)||(37422589-37422717)
chr7 (243-396)||(3162871-3163027)
chr7 (243-396)||(43334132-43334288)
chr7 (243-400)||(46428012-46428172)
chr7 (235-389)||(30469506-30469663)
chr7 (243-396)||(30659857-30660013)
chr7 (243-398)||(8487703-8487862)
chr7 (268-398)||(21866278-21866409)
chr7 (268-396)||(30660406-30660534)
chr7 (235-398)||(8487023-8487190)
chr7 (235-398)||(8512698-8512865)
chr7 (243-398)||(8513358-8513517)
chr7 (272-386)||(38816720-38816835)
chr7 (235-398)||(25245556-25245724)
chr7 (243-398)||(31178642-31178800)
chr7 (243-398)||(38059849-38060008)
chr7 (306-398)||(28451192-28451285)
chr7 (323-398)||(21865651-21865727)
chr7 (295-389)||(46427550-46427644)
[»] chr5 (9 HSPs)
chr5 (248-400)||(42519647-42519803)
chr5 (243-396)||(42520328-42520485)
chr5 (235-398)||(42521586-42521753)
chr5 (235-398)||(21147992-21148159)
chr5 (243-398)||(23206089-23206248)
chr5 (243-398)||(42520619-42520778)
chr5 (243-398)||(21145938-21146097)
chr5 (323-393)||(31218780-31218851)
chr5 (348-398)||(31219884-31219934)
[»] chr4 (17 HSPs)
chr4 (235-396)||(21824551-21824715)
chr4 (243-400)||(21825041-21825201)
chr4 (243-398)||(42882750-42882909)
chr4 (294-400)||(42883361-42883468)
chr4 (243-398)||(45919513-45919672)
chr4 (271-398)||(45920182-45920310)
chr4 (243-398)||(46619522-46619681)
chr4 (268-398)||(46618380-46618511)
chr4 (268-398)||(42058516-42058645)
chr4 (243-398)||(41695386-41695545)
chr4 (243-398)||(41696015-41696174)
chr4 (243-400)||(4158504-4158665)
chr4 (248-347)||(31915171-31915272)
chr4 (306-398)||(29212062-29212155)
chr4 (366-400)||(4157900-4157934)
chr4 (272-400)||(24377843-24377971)
chr4 (246-302)||(52362743-52362802)
[»] scaffold0155 (2 HSPs)
scaffold0155 (277-400)||(1674-1798)
scaffold0155 (235-396)||(992-1154)
[»] scaffold0009 (2 HSPs)
scaffold0009 (235-398)||(105504-105671)
scaffold0009 (243-398)||(106184-106343)
[»] scaffold0301 (1 HSPs)
scaffold0301 (235-398)||(20724-20889)
[»] scaffold0188 (1 HSPs)
scaffold0188 (243-398)||(25616-25775)
[»] scaffold0853 (2 HSPs)
scaffold0853 (235-398)||(609-771)
scaffold0853 (306-398)||(2219-2312)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 250 - 400
Target Start/End: Complemental strand, 36732131 - 36731977
Alignment:
Q  250 tcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat 346  Q
    ||||||||||| |||||||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36732131 tcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat 36732032  T
Q  347 -attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
      ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36732031 gcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctct 36731977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 235 - 400
Target Start/End: Complemental strand, 39861713 - 39861544
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39861713 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttaacatcaaatcctaaccattaatccaactttaatctaacgtctctcatcaattc 39861614  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39861613 attaaattctcacgtgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctct 39861544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 400
Target Start/End: Original strand, 25128588 - 25128749
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||     
T  25128588 gataagatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaata 25128687  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
     ||| ||| ||||||| ||||  ||||||||||||||| ||||||  |||||||||||||||    
T  25128688 ttcaaatacttgatcatatgatgcaaattttaattttagaaataaaatattctttcttctct 25128749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 396
Target Start/End: Complemental strand, 5882437 - 5882308
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaat 366  Q
    ||||||||||||||  ||||| ||| |||||||||||| ||||||   |||  |||||||||||||||||| |||||||  |||||||||||| ||||||    
T  5882437 aattaaatttgacacaaaatcctaaccattaatccaacattaatccgccgttgctcatcaattcattaaatgctcacatgcttgatcaaatgatccaaat 5882338  T
Q  367 tttaattttaaaaataatttattctttctt 396  Q
    ||||||||||||||||||||||||||||||    
T  5882337 tttaattttaaaaataatttattctttctt 5882308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 268 - 396
Target Start/End: Original strand, 17450556 - 17450684
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 367  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||||||||| |||||||  | ||||||| | | || ||    
T  17450556 aattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatgcttatcaaattatctaattt 17450655  T
Q  368 ttaattttaaaaataatttattctttctt 396  Q
    ||||||||| ||| |||||||||||||||    
T  17450656 ttaattttagaaacaatttattctttctt 17450684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 294 - 400
Target Start/End: Complemental strand, 25191509 - 25191402
Alignment:
Q  294 cattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctt 392  Q
    |||||||||||||||||||  ||||| |||||||||||| |||||  ||||||  |||||||| |||  ||||||||||||||| |||||||||||||||    
T  25191509 cattaatccaactttaatccgacgtccctcatcaattcagtaaatgttcacatgcttgatcaactgattcaaattttaattttagaaataatttattctt 25191410  T
Q  393 tcttctct 400  Q
    ||||||||    
T  25191409 tcttctct 25191402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 25129353 - 25129263
Alignment:
Q  307 ttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||| ||||||||||||||||||||||||| ||||||| || ||| |||||| |||||||||||||||| |||||||||||| ||||||    
T  25129353 ttaatccaacgtctctcatcaattcattaaatgctcacatgtttgatgaaatgatccaaattttaattttagaaataatttattatttctt 25129263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 5881201 - 5881291
Alignment:
Q  307 ttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||| ||||||||||||||||||||||||| |||||||  ||||| |||||| ||||| |||||||||| ||||||| |||||||||||    
T  5881201 ttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatgaaatgatccaaactttaattttagaaataatgtattctttctt 5881291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 398
Target Start/End: Original strand, 29266165 - 29266323
Alignment:
Q  244 atatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattc 340  Q
    |||| |||||||||||| |||||||  ||||||||||||||||||||| |||  |||||| | | |||||||||||| ||| ||| || ||||||| |      
T  29266165 atataatcaaatgacaccaaggtgtcaaattaaatttgacatcaaatcctaactattaatacgattttaatctaacggctcccataaactcattaagtat 29266264  T
Q  341 tcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    | ||||  |||||||||||| |||  ||||| ||||| |||||||||||||||||||||    
T  29266265 ttacatgcttgatcaaatgacccactttttatttttagaaataatttattctttcttct 29266323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 396
Target Start/End: Original strand, 36731375 - 36731497
Alignment:
Q  273 aatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaattttaat 372  Q
    ||||||||| |||||| ||| ||||||| |||| ||||||  ||||||| ||||||||||||||||  ||| ||  |  |||||| | ||||| ||||||    
T  36731375 aatttgacaccaaatcttaaccattaattcaaccttaatccgacgtctcccatcaattcattaaatgttcatatgct-ttcaaataatccaaaatttaat 36731473  T
Q  373 tttaaaaataatttattctttctt 396  Q
    ||||||||||||||||||||||||    
T  36731474 tttaaaaataatttattctttctt 36731497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 37437963 - 37438058
Alignment:
Q  306 tttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    |||||||||||| ||| ||||||||||||| || |||||||||| |||||||| | |||  ||||||||||| |||||||||||||||| ||||||    
T  37437963 tttaatctaacggctcccatcaattcattagatgctcacatatttgatcaaattatccatcttttaattttagaaataatttattcttttttctct 37438058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 39131054 - 39130994
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaa 328  Q
    |||||||||||||| |||||||||| |||||||| ||||||||||  ||||||||||||||    
T  39131054 aattaaatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaa 39130994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 29361882 - 29361975
Alignment:
Q  306 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||| ||| |||||||||||||| | || ||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  29361882 tttaatctaacggctcccatcaattcattaagtgctaacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 29361975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 396
Target Start/End: Original strand, 39860991 - 39861119
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaact-ttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaat 366  Q
    |||| ||||||| || ||||| ||| ||||||| ||||  ||||||  ||||||| |||||||||||||||| |||||||  |  |||||| | |||||     
T  39860991 aatttaatttgatattaaatcttaaccattaattcaaccattaatccgacgtctcccatcaattcattaaatgctcacatgctt-tcaaataatccaaaa 39861089  T
Q  367 tttaattttaaaaataatttattctttctt 396  Q
    ||||||||||  ||||||||||||||||||    
T  39861090 tttaattttagtaataatttattctttctt 39861119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 398
Target Start/End: Complemental strand, 5332222 - 5332068
Alignment:
Q  248 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 344  Q
    ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || |||||||   |||||    
T  5332222 gatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagagctcac 5332123  T
Q  345 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||  |||||||| |||  ||  ||||| ||||| |||||||||||||||||||||    
T  5332122 atgcttgatcaagtgactcaccttttatttttagaaataatttattctttcttct 5332068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 42987530 - 42987383
Alignment:
Q  243 gatatgatcaaatgacacaaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattc 340  Q
    |||| |||||||||||||  |||||  ||||||| |||||| |||||| |||  ||||||  |  |||||||||| |  || |||||||||||||| | |    
T  42987530 gataagatcaaatgacaccgggtgtcaaattaaacttgacaccaaatcctaactattaatatagttttaatctaaaggttcacatcaattcattaagtgc 42987431  T
Q  341 tcacata-ttgatcaaatgagccaaattttaattttaaaaataattta 387  Q
    ||| ||  |||||||| ||| |||  ||||||||||||||||||||||    
T  42987430 tcatatgcttgatcaagtgacccaccttttaattttaaaaataattta 42987383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 398
Target Start/End: Original strand, 5330901 - 5331055
Alignment:
Q  248 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 344  Q
    ||||||||||||| |||||||  |||||||||||||| |||||  ||  ||||||| |   |||||||||||| ||| ||| || ||||||| | |||||    
T  5330901 gatcaaatgacaccaaggtgttaaattaaatttgacaccaaattctagccattaatacggttttaatctaacggctcccataaactcattaagtgctcac 5331000  T
Q  345 at-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||  |||||||| ||| |||  ||||| ||||| ||||||||||  |||||||||    
T  5331001 atgcttgatcaagtgacccaccttttatttttagaaataatttaaactttcttct 5331055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 389
Target Start/End: Original strand, 42986648 - 42986798
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| || ||||  |||||||||||||| |||||||||  |||||||     |||||| ||| | ||||||| |||||||||| |     
T  42986648 gataggatcaaatgacaccaaagtgtcaaattaaatttgacaccaaatcatagccattaataatgttttaatttaatggctctcattaattcattaagtg 42986747  T
Q  340 ctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttatt 389  Q
    ||| ||| || |||||| ||| |||  ||||||||||| ||||||||||||    
T  42986748 ctcgcatgtttgatcaagtgacccaccttttaattttataaataatttatt 42986798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 243 - 400
Target Start/End: Original strand, 21790752 - 21790913
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21790752 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaatt 21790851  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  21790852 ctcacatgcttgatcaaatgagccaaattttaattttagaaataattaattctttcttctct 21790913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 243 - 400
Target Start/End: Original strand, 29858924 - 29859079
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| ||| |||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  29858924 gataggatcaaatgacaccaagatgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatctaacgtctcgcatcaattcattaaatt 29859023  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||||     |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  29859024 ctcaca-----atcaaatgagtcaaattttaattttagaaataatttattctttcttctct 29859079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 268 - 396
Target Start/End: Original strand, 47052374 - 47052503
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 366  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||| | ||||    
T  47052374 aattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaat 47052473  T
Q  367 tttaattttaaaaataatttattctttctt 396  Q
    |||||||||||||| |||||||||||||||    
T  47052474 tttaattttaaaaacaatttattctttctt 47052503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 268 - 400
Target Start/End: Original strand, 44233237 - 44233370
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 366  Q
    ||||||||||||||||||||  |||  ||||||||||||||||||| |||||||||||||||| ||||||| |||||||  |||||||||||| ||||||    
T  44233237 aattaaatttgacatcaaattctaacaattaatccaactttaatctgacgtctctcatcaatttattaaatgctcacatgcttgatcaaatgatccaaat 44233336  T
Q  367 tttaattttaaaaataatttattctttcttctct 400  Q
    ||||||||||||||||||||||| ||| ||||||    
T  44233337 tttaattttaaaaataatttattatttattctct 44233370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 235 - 400
Target Start/End: Complemental strand, 16960188 - 16960020
Alignment:
Q  235 atatatgagatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| |||||||||||| || |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  16960188 atatatgggataggatcaaatgacatcatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctatcatcaattc 16960089  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||||| |||||||  |||||||||| | |||||||||||||||| ||| ||||| |||||||||||||    
T  16960088 attaaatgctcacatgcttgatcaaattatccaaattttaattttagaaacaattt-ttctttcttctct 16960020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 235 - 400
Target Start/End: Original strand, 46284748 - 46284917
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| || ||||  ||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||| ||||||    
T  46284748 atatatgggataggatcaaatgacaccaaagtgtcaaattaaatttgacatcaaatcctaaccattaatccaactttaatccgacgtctctcaacaattc 46284847  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||||| || ||||  ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  46284848 attaaatgcttacatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttctct 46284917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 235 - 396
Target Start/End: Original strand, 27651326 - 27651490
Alignment:
Q  235 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||||||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||| |||||||||||  |||||||||||||||||    
T  27651326 atatatgggatatgatcaaatgacaccatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccgacgtctctcatcaattc 27651425  T
Q  332 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    ||||||| |||||||| | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  27651426 attaaatgctcacatacttatcaaattatctaatttttaattttagaaacaatttattctttctt 27651490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 243 - 394
Target Start/End: Original strand, 14886154 - 14886309
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  ||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  14886154 gataggatcaaatgacaccatggtgtcaaatcaaatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatg 14886253  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 394  Q
    |||||||  |||||||||| | | |||||||||||||| ||| |||||||||||||    
T  14886254 ctcacatgcttgatcaaattatctaaattttaattttagaaacaatttattctttc 14886309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 14886883 - 14886726
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||     
T  14886883 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatg 14886784  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
     ||||||  |||| ||||||| | |||||||||||||| ||| |||||||||||||||    
T  14886783 ttcacatgcttgagcaaatgatctaaattttaattttagaaacaatttattctttctt 14886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 268 - 396
Target Start/End: Complemental strand, 48302218 - 48302089
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 366  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||||||||| | | | ||    
T  48302218 aattaaatttgacaccaaaccataaccattaatccaactttaatctcacgtctctcatcaattcattaaatgctcacatgtttgatcaaattatctacat 48302119  T
Q  367 tttaattttaaaaataatttattctttctt 396  Q
    |||||||||| ||| |||||||||||||||    
T  48302118 tttaattttagaaacaatttattctttctt 48302089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 42986750 - 42986917
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgtaa--ttaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    |||||||||||||||||||||||||| ||| |||||  |||||||||||| |||||| || |||||||| |   |||||||||| | ||||||| |||||    
T  42986750 atatatgagatatgatcaaatgacaccaagatgtaaaattaaatttgacaccaaatcttagtcattaatactcatttaatctaatggctctcattaattc 42986849  T
Q  332 attaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||| | ||||||| || |||||||||| |||  |||||||||||||||||||||||||||||||||    
T  42986850 attaagtgctcacatgtttgatcaaatgatccaccttttaattttaaaaataatttattctttcttct 42986917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 394
Target Start/End: Complemental strand, 26897156 - 26897033
Alignment:
Q  272 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 370  Q
    |||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||  |||||||||| | | ||||||||    
T  26897156 aaatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatactcatatgcttgatcaaattatctaaatttta 26897057  T
Q  371 attttaaaaataatttattctttc 394  Q
    |||||| ||| |||||||||||||    
T  26897056 attttagaaacaatttattctttc 26897033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 2271388 - 2271229
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||||||||||||||||| || ||||  ||||||||||||||  ||||| ||| |||||||||||||||||||  ||||| ||||||||||||||| ||     
T  2271388 gatatgatcaaatgacaccaatgtgtcaaattaaatttgacactaaatcctaaccattaatccaactttaatccgacgtccctcatcaattcattagatg 2271289  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
     ||||||  |||||||||||| | ||| |||||||||| ||||||| |||||||||||||    
T  2271288 ttcacatgcttgatcaaatgatcaaaaatttaattttagaaataatgtattctttcttct 2271229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 396
Target Start/End: Original strand, 6690339 - 6690459
Alignment:
Q  277 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaatttt 375  Q
    |||||||||||| ||| |||||||||||||||||||  ||||  |||||||||| ||||||| |||||||  |||||||||||| |||||||||||||||    
T  6690339 tgacatcaaatcctaaccattaatccaactttaatccgacgttgctcatcaatttattaaatgctcacatgcttgatcaaatgatccaaattttaatttt 6690438  T
Q  376 aaaaataatttattctttctt 396  Q
    | |||||||||||| ||||||    
T  6690439 agaaataatttattatttctt 6690459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 396
Target Start/End: Complemental strand, 27652126 - 27651998
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 367  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||  |||| ||||||||||||||||||| |||||||  | ||||||| | | |||||    
T  27652126 aattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtttctcatcaattcattaaatgctcacatgcttatcaaattatctaaatt 27652027  T
Q  368 ttaattttaaaaataatttattctttctt 396  Q
    ||||||||| ||| ||||| |||||||||    
T  27652026 ttaattttagaaacaatttgttctttctt 27651998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 16959505 - 16959661
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| |||||||| |||| |||||||  ||||||||||||||  ||||| ||| |||||||||| ||||||||| |||||||||||||| |||||||||     
T  16959505 gataggatcaaataacaccaaggtgtcaaattaaatttgacactaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatg 16959603  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  16959604 ctcacatgtttgaacaaataatccaaattttaattttagaaataatttattccttctt 16959661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 46285600 - 46285443
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||||| | |||   ||||   |||||||||||||||||     
T  46285600 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatccaacgtaaattcgacgttgatcatcaattcattaaatg 46285501  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||| ||  |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  46285500 ctcaaatgcttgatcaaattatccaaattttaattttagaaataatttattctttctt 46285443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 400
Target Start/End: Complemental strand, 6691112 - 6690984
Alignment:
Q  272 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 370  Q
    |||||||||| |||||||||| |||||||||||||||||||  | |||||||| ||||||||||||| |||||||  ||||||||||||  |||||||||    
T  6691112 aaatttgacaccaaatcataaccattaatccaactttaatccgatgtctctcaacaattcattaaatactcacatgtttgatcaaatgattcaaatttta 6691013  T
Q  371 attttaaaaataatttattctttcttctct 400  Q
    | |||| ||||||  |||||||||||||||    
T  6691012 a-tttagaaataaaatattctttcttctct 6690984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 376
Target Start/End: Original strand, 26896507 - 26896607
Alignment:
Q  277 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaatttt 375  Q
    ||||| ||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||| | |||||||||||||    
T  26896507 tgacaccaaatcataactattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaattttaatttt 26896606  T
Q  376 a 376  Q
    |    
T  26896607 a 26896607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 396
Target Start/End: Complemental strand, 29859679 - 29859561
Alignment:
Q  279 acatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatat-tgatcaaatgagccaaattttaattttaa 377  Q
    |||||||||  ||| |||| || || ||||||||  | ||||| |||||||||||||||| |||||||   |||||||||||| ||||||||||||||||    
T  29859679 acatcaaattttaaccattcattcatctttaatccgatgtctcccatcaattcattaaatgctcacatgcatgatcaaatgagacaaattttaattttaa 29859580  T
Q  378 aaataatttattctttctt 396  Q
    |||||||||||||||||||    
T  29859579 aaataatttattctttctt 29859561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 235 - 396
Target Start/End: Complemental strand, 21791543 - 21791380
Alignment:
Q  235 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||| ||| ||||||| |||| ||||||  ||||||| | |||||||    
T  21791543 atatatgggataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcttaaccattaattcaaccttaatccgacgtctcccgtcaattc 21791444  T
Q  332 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  ||||||  |  |||||| | ||||| |||||||||| |||||||||||||||||||    
T  21791443 attaaatgttcacatgct-ttcaaataatccaaaatttaattttagaaataatttattctttctt 21791380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 48301913 - 48302022
Alignment:
Q  285 aatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataa 383  Q
    ||||||||||||||||  ||||||||||| | ||||||||||||||| |||||| |||||||  |||||||||||| | |||||||||||||| ||  ||    
T  48301913 aatcataatcattaattaaactttaatctgatgtctctcatcaattcgttaaatgctcacatgcttgatcaaatgatctaaattttaattttagaatcaa 48302012  T
Q  384 tttattcttt 393  Q
    ||||||||||    
T  48302013 tttattcttt 48302022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 39848931 - 39848772
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| ||  |||||||||||| ||||||| || ||||||| |     
T  39848931 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacagttttaatctaacggctctcataaactcattaagtg 39848832  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  39848831 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 39848772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 39847810 - 39847968
Alignment:
Q  243 gatatgatcaaatgacacaaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattc 340  Q
    |||| ||||||||||||| | ||||  |||||||||||||| |||||| || |||||||| |   |||||||||||| ||||||| || ||||||| |      
T  39847810 gataggatcaaatgacaccaagtgtcaaattaaatttgacaccaaatcctagtcattaatacggttttaatctaacggctctcataaactcattaagtgt 39847909  T
Q  341 tcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||||  |||||||| ||| |||  ||||| |||||||||||||||||||||||||||    
T  39847910 tcacatgcttgatcaagtgacccaccttttatttttaaaaataatttattctttcttct 39847968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 47374897 - 47374738
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| |||| || |||||||||| |     
T  47374897 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatactgttttaatctaacggctcttattaattcattaagtg 47374798  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| |||  ||  ||||| ||||| |||||||||||||||||||||    
T  47374797 ctcacatgcttgatcaagtgacacatcttttatttttataaataatttattctttcttct 47374738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 400
Target Start/End: Complemental strand, 44234663 - 44234556
Alignment:
Q  294 cattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctt 392  Q
    |||||||||||||||||| | |||| | |||| |||| |||||||  |||||| || |||||||||| || ||||||||||||| |||||||||||| ||    
T  44234663 cattaatccaactttaatatgacgtttttcataaatttattaaatgatcacatgtttgatcaaatgatccgaattttaattttagaaataatttattatt 44234564  T
Q  393 tcttctct 400  Q
    | ||||||    
T  44234563 ttttctct 44234556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 400
Target Start/End: Original strand, 26212912 - 26213081
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| |||||||  ||| |||||||||| |||||| ||  |||||||  |  ||||||| |||| |||| |||||||     
T  26212912 atatatgggataggatcaaatgacactaaggtgtcaaataaaatttgacaccaaatcttatccattaatatagttttaatccaacggctctaatcaattt 26213011  T
Q  332 attaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
      ||| | |||||||||| ||| ||||||||||  ||||||||||| ||| ||| |||||||||||||||    
T  26213012 tataagtgctcacatatttgattaaatgagccaccttttaattttagaaacaatctattctttcttctct 26213081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 393
Target Start/End: Complemental strand, 42987108 - 42986982
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 366  Q
    ||||||||||||||||||||| ||| |||||||  |  |||||||||| |  || |||||||||||||| |  ||||||  |||||||| ||| |||  |    
T  42987108 aattaaatttgacatcaaatcctaaccattaatatagttttaatctaaaggttcacatcaattcattaagtgttcacatgcttgatcaagtgacccacct 42987009  T
Q  367 tttaattttaaaaataatttattcttt 393  Q
    |||||||||| ||||||||||||||||    
T  42987008 tttaattttagaaataatttattcttt 42986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 392
Target Start/End: Original strand, 10716705 - 10716826
Alignment:
Q  272 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 370  Q
    |||||| ||| |||||  ||||||||||| | | |||||||||||| ||| |||||||||||||| | |||||||  |||||||| ||| |||  |||||    
T  10716705 aaatttaacaccaaattctaatcattaatacgattttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatctttta 10716804  T
Q  371 attttaaaaataatttattctt 392  Q
     ||||| |||||||||||||||    
T  10716805 tttttagaaataatttattctt 10716826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 392
Target Start/End: Original strand, 7011966 - 7012119
Alignment:
Q  243 gatatgatcaaatgacaca-aggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    ||||||||||||||||||  ||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  7011966 gatatgatcaaatgacaccgaggtgtcaaattaaatttgacaccaaatcctagccattaattcgggtttaatctaacggctcccataaactcattaagtg 7012065  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctt 392  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||    
T  7012066 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctt 7012119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 5216563 - 5216718
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||||||||||| | |||||| ||| ||||||| |||| ||||||  ||||||| | ||||||||||||||     
T  5216563 gataggatcaaatgacaccatggtgtcaaattaaatttgataccaaatcttaaccattaattcaaccttaatccgacgtctcccgtcaattcattaaatg 5216662  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
     ||||||  |  |||||| |  |||| |||||||||| |||||||||||| ||||||    
T  5216663 ttcacatgct-ttcaaataattcaaaatttaattttagaaataatttattatttctt 5216718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 47374112 - 47374205
Alignment:
Q  306 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||| ||  |||||||||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  47374112 tttaatctaacggcttccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 47374205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 7013089 - 7012930
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| |||  || || ||||| | |     
T  7013089 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctccgataaactcattgagtg 7012990  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  7012989 ctcacatgcttgatcaagtgacccactttttatttttagaaataatttattctttcttct 7012930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 235 - 400
Target Start/End: Complemental strand, 19653926 - 19653757
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  19653926 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatccaactttaatctgacgtctctcatcaattc 19653827  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||||| |||| ||  || ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  19653826 attaaatgctcatatgtttaatcaaatgatccaaattttaattttagaaataatttattctttcttctct 19653757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 235 - 396
Target Start/End: Complemental strand, 8993646 - 8993481
Alignment:
Q  235 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| ||||    
T  8993646 atatatgggataggatcaaatgacaccacggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatccattc 8993547  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
     |||||| |||||||  |||||||||||| | |||||||||||||| ||| |||||||||||||||    
T  8993546 tttaaatgctcacatgtttgatcaaatgatctaaattttaattttagaaacaatttattctttctt 8993481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 235 - 396
Target Start/End: Complemental strand, 9018093 - 9017928
Alignment:
Q  235 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| ||||    
T  9018093 atatatgggataggatcaaatgacaccacggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatccattc 9017994  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
     |||||| |||||||  |||||||||||| | |||||||||||||| ||| |||||||||||||||    
T  9017993 tttaaatgctcacatgtttgatcaaatgatctaaattttaattttagaaacaatttattctttctt 9017928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 394
Target Start/End: Original strand, 8992909 - 8993064
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||     
T  8992909 gataggatcaaatgacaccatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaata 8993008  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 394  Q
    |||||||  |||||||||| | | |||||||||||||| ||| |||||||||||||    
T  8993009 ctcacatgcttgatcaaattatctaaattttaattttagaaacaatttattctttc 8993064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 394
Target Start/End: Original strand, 9017356 - 9017511
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||     
T  9017356 gataggatcaaatgacaccatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaata 9017455  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 394  Q
    |||||||  |||||||||| | | |||||||||||||| ||| |||||||||||||    
T  9017456 ctcacatgcttgatcaaattatctaaattttaattttagaaacaatttattctttc 9017511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 18649952 - 18649796
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||||| |||     
T  18649952 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatg 18649853  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  | | ||||| | | |||||||||||||| ||| |||||||||||||||    
T  18649852 ctcacatgcttaacaaattatctaaattttaattttagaaacaatttattctttctt 18649796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 243 - 346
Target Start/End: Original strand, 19651073 - 19651179
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||     
T  19651073 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaatcattaatccaactttaatctgacgtctctcattaattcattaaatg 19651172  T
Q  340 ctcacat 346  Q
    |||||||    
T  19651173 ctcacat 19651179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 238 - 346
Target Start/End: Complemental strand, 9280951 - 9280840
Alignment:
Q  238 tatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcatt 334  Q
    |||| |||| ||||||||||||| || ||||  |||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||| |||    
T  9280951 tatgcgataggatcaaatgacaccaatgtgtcaaattaaatttgacaccaaatccaaatcattaatccaactttaatctaaagtctctcatcaatttatt 9280852  T
Q  335 aaattctcacat 346  Q
    ||||||||||||    
T  9280851 aaattctcacat 9280840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 32907429 - 32907584
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||| ||||||||| |||||| ||| ||||||| |||| ||||||| ||||||| |||||||||||||||      
T  32907429 gataggatcaaatgacaccatggtgtcaaatttaatttgacaccaaatcttaaccattaattcaaccttaatctgacgtctcccatcaattcattaaagg 32907528  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  |  |||||| | ||||| |||||||||| |||||||||||||||||||    
T  32907529 ctcacatgct-ttcaaataatccaaaatttaattttagaaataatttattctttctt 32907584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 4446370 - 4446564
Alignment:
Q  48 gtgcgctggatcagtggcatcccgtggatcatgttttatgtattcgcaaaaattgatgtccaa-ctcattgtttttggattgtataattcgaactaggtt 146  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| || |||||||||| |||||||||| |||| ||||||    
T  4446370 gtgcactggatcagtggcatcccgtggataatgttttatgtattcgcaaaaattgctgtgcaaactgattgtttttgaattgtataatccgaagtaggtt 4446469  T
Q  147 tcatattttaaaatctgaagagtatttttg-nnnnnnntagagcgcctgaaaaacacatagggtgtgaaaagtaagaattagtctattcatatat 240  Q
    |||||||||||||||| |||||||||||||        ||||||   ||| |||||| |||| ||||||||||||||||||| ||| ||||||||    
T  4446470 tcatattttaaaatctaaagagtatttttgaaaaaaaatagagcatgtgagaaacacgtaggatgtgaaaagtaagaattagcctactcatatat 4446564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 235 - 400
Target Start/End: Original strand, 19386289 - 19386457
Alignment:
Q  235 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||||||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||| ||| | ||||||||    
T  19386289 atatatgggatatgatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacatctattatcaattc 19386388  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||||| |||||||  |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  19386389 attaaatgctcacatgcttgatcaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 19386457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 248 - 400
Target Start/End: Original strand, 121311 - 121467
Alignment:
Q  248 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 344  Q
    ||||||||||||| |||||||  ||||||||||||||  ||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| ||||     
T  121311 gatcaaatgacactaaggtgtcaaattaaatttgacactaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaa 121410  T
Q  345 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||| ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  121411 atacttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttctct 121467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 123008 - 122851
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||  ||| ||||||| |||| |||||| |||||||||||||||||||||||||     
T  123008 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaattctaaccattaattcaacattaatccaacgtctctcatcaattcattaaatg 122909  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||| ||||| |||||| ||||| |||||||||| ||||||| |||||||||||    
T  122908 ctcacatacttgatgaaatgatccaaactttaattttagaaataatgtattctttctt 122851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 235 - 396
Target Start/End: Original strand, 20202644 - 20202808
Alignment:
Q  235 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| |||||||||||||   |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||    
T  20202644 atatatgggataggatcaaatgacaccgtggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattc 20202743  T
Q  332 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    ||||||| |||||||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  20202744 attaaatgctcacatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 20202808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 235 - 396
Target Start/End: Original strand, 8911160 - 8911323
Alignment:
Q  235 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    |||||||||||| ||||||||||||| | |||||  ||||| |||||||| |||||||||| ||||||| |||||||||||  |||||||||||||| ||    
T  8911160 atatatgagataggatcaaatgacaccatggtgtcaaattatatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaa-tc 8911258  T
Q  332 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    ||||||| |||||||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  8911259 attaaatactcacatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 8911323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 8911890 - 8911734
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||| |  ||||||||||||||||     
T  8911890 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgttttccatcaattcattaaatg 8911791  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  | ||||||| | | |||||||||||||| ||| |||||||||||||||    
T  8911790 ctcacatgcttatcaaattatctaaattttaattttagaaacaatttattctttctt 8911734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 4776249 - 4776406
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||||||||||||||||| || ||||  ||||||||||||||  ||||| |||  ||||||||||| ||||||  ||||  ||||||||||||||||||     
T  4776249 gatatgatcaaatgacactaaagtgtcaaattaaatttgacactaaatcctaacaattaatccaacattaatccgacgttgctcatcaattcattaaatg 4776348  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  |||||||| ||| | |||||| ||||||| |||||||||||||||||||    
T  4776349 ctcacatgcttgatcaattgatcaaaatttcaattttagaaataatttattctttctt 4776406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 396
Target Start/End: Complemental strand, 19386944 - 19386816
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaat 366  Q
    ||||||||||||||  ||||| ||| |||||||||| ||||||||| |||||||||||||| ||||||||| |||| ||  |||| ||||| | ||||||    
T  19386944 aattaaatttgacactaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatgctcatatgcttgaacaaataatccaaat 19386846  T
Q  367 tttaattttaaaaataatttattctttctt 396  Q
    |||||||||| ||||||||||||| |||||    
T  19386845 tttaattttagaaataatttattccttctt 19386816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 39629568 - 39629409
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||  ||  ||||||| ||  |||||||||||| |||||||||||||||||| |     
T  39629568 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaattctagccattaatacagttttaatctaacggctctcatcaattcattaagtg 39629469  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  ||||| || ||| |||  ||||| ||||| |||||||||||||||||||||    
T  39629468 ctcacatgcttgattaagtgacccatcttttatttttagaaataatttattctttcttct 39629409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 396
Target Start/End: Complemental strand, 20203323 - 20203197
Alignment:
Q  270 ttaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatttt 369  Q
    |||||||||||| |||||||||| ||||||| |||||||||||  |||| | ||||||||||||| ||| |||||||  | | ||||| |   |||||||    
T  20203323 ttaaatttgacaccaaatcataaccattaattcaactttaatccgacgtttttcatcaattcattgaatgctcacatgcttaacaaattatataaatttt 20203224  T
Q  370 aattttaaaaataatttattctttctt 396  Q
    ||||||| ||| |||||||||||||||    
T  20203223 aattttagaaacaatttattctttctt 20203197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 277 - 400
Target Start/End: Complemental strand, 44929145 - 44929021
Alignment:
Q  277 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaatttt 375  Q
    |||||| ||||| ||  |||||||  || ||||||||||||    ||||||||||||||||| |||||||||| |||||||||| |||  ||||||||||    
T  44929145 tgacattaaatcctagccattaatataattttaatctaacggtgttcatcaattcattaaatgctcacatatttgatcaaatgacccaccttttaatttt 44929046  T
Q  376 aaaaataatttattctttcttctct 400  Q
    | |||||||||||| ||||||||||    
T  44929045 agaaataatttattatttcttctct 44929021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 38956050 - 38956162
Alignment:
Q  284 aaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaata 382  Q
    ||||| ||| |||||||||| |||||||| |||||||||| |||| ||||||||| |||||||  |||| ||||| | | |||||||||||||| |||||    
T  38956050 aaatcctaaccattaatcca-ctttaatccaacgtctctcgtcaagtcattaaatgctcacatgcttgaacaaattatctaaattttaattttagaaata 38956148  T
Q  383 atttattctttctt 396  Q
    || |||||||||||    
T  38956149 atctattctttctt 38956162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 42848711 - 42848878
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||  |||||||  |||||||||||||| |||||| ||  |||||||     |||||||||||| ||| |||||||||    
T  42848711 atatatgggataggatcaaatgacaataaggtgtcaaattaaatttgacaccaaatcctagccattaatatggttttaatctaacgactcccatcaattc 42848810  T
Q  332 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||| |  ||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  42848811 attaagtgttcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 42848878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 42849552 - 42849393
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| |||||||||||||| |     
T  42849552 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattcattaagtg 42849453  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  ||||| || ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  42849452 ctcacatgcttgattaagtgacccatcttttatttttagaaataatttattcttttttct 42849393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 389
Target Start/End: Original strand, 44926643 - 44926794
Alignment:
Q  243 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaa-t 338  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||||||| ||  ||||||| ||  |||||| |||||  ||  |||||||||||||| |    
T  44926643 gatatgatcaaatgacatcaaggtgtcaaattaaattttacatcaaatcctacccattaatacagttttaatttaacggttccaatcaattcattaaagt 44926742  T
Q  339 tctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttatt 389  Q
     |||||||| |||||||| ||| |||  ||||||||||| ||||||||||||    
T  44926743 gctcacatacttgatcaactgatccatcttttaattttacaaataatttatt 44926794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 398
Target Start/End: Original strand, 13327736 - 13327905
Alignment:
Q  233 tcatatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaat 329  Q
    ||||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| ||||||| |   |||||||||||| |||  || ||     
T  13327736 tcatatatgggataagatcaaatgacaccaaggtgttaaattaaatttgacaccaaatcctaaccattaatacggttttaatctaacggctccgataaac 13327835  T
Q  330 tcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||| |   |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||||||||    
T  13327836 tcattgagcgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattatttcttct 13327905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 39628805 - 39628898
Alignment:
Q  306 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||| ||  |||||||||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  39628805 tttaatctaacggcttccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 39628898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 398
Target Start/End: Complemental strand, 13328860 - 13328706
Alignment:
Q  248 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 344  Q
    ||||||||||||| |||||||  |||||||||||||| |||||  ||  ||||||| |   |||||||||||| ||  ||| || | ||||| | |||||    
T  13328860 gatcaaatgacactaaggtgttaaattaaatttgacaccaaattctagccattaatacgggtttaatctaacgacttccataaacttattaagtgctcac 13328761  T
Q  345 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||  |||||||| ||| |||  ||||| |||||||||||||||||||||||||||    
T  13328760 atgcttgatcaagtgacccaccttttatttttaaaaataatttattctttcttct 13328706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 397
Target Start/End: Complemental strand, 4776987 - 4776905
Alignment:
Q  316 cgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttc 397  Q
    ||||| ||| ||||||||||||| |||| ||  ||||||||||||  ||||||||||||||| ||||||  ||||||||||||    
T  4776987 cgtctttcaacaattcattaaatgctcatatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttc 4776905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 400
Target Start/End: Original strand, 38273553 - 38273714
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| |||||||| |||| |||||||  ||| |||||||||| |||||| ||  |||||||  |  ||||||| |||| |||| ||||||||  ||| |     
T  38273553 gataggatcaaataacaccaaggtgtcaaataaaatttgacaccaaatcttatccattaatatagttttaatccaacggctctaatcaattctataagtg 38273652  T
Q  340 ctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    |||||||||| ||| ||||||||||  ||||||||||| ||| ||  |||||||||||||||    
T  38273653 ctcacatatttgattaaatgagccaccttttaattttagaaacaacctattctttcttctct 38273714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 2477944 - 2477851
Alignment:
Q  306 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||| ||| ||| || ||||||| | |||||||  |||||||| ||| |||  ||||||||||| ||||||||||  |||||||||    
T  2477944 tttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttaattttagaaataatttaaactttcttct 2477851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 41710250 - 41710093
Alignment:
Q  243 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| |||||||||||| || |||||  |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||     
T  41710250 gataagatcaaatgacatcatggtgtcaaattaaatttgacaccaaatcataatcattaattcaactttaatccaacgtctctcatcaattcattaaatg 41710151  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  |||||||||||| | |||||||||||||| ||| |||||||||||||||    
T  41710150 ctcacatgcttgatcaaatgatctaaattttaattttagaaacaatttattctttctt 41710093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 243 - 400
Target Start/End: Original strand, 51827564 - 51827725
Alignment:
Q  243 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    ||||||||||||||||| ||||||||  |||||||||||||| |||||||||| |||||||||||||||||||  |||||||||| |||||||||||||     
T  51827564 gatatgatcaaatgacatcaaggtgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatccgacgtctctcaacaattcattaaatg 51827663  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    |||||||  ||||||||||||  ||||||||||||||| ||||||  |||||| ||||||||    
T  51827664 ctcacatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctatcttctct 51827725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 394
Target Start/End: Original strand, 41709553 - 41709676
Alignment:
Q  272 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 370  Q
    |||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||  |||||||||| | | ||||||||    
T  41709553 aaatttgacaccaaatcataaccattaatccaactttaatatgacgtctctcatcaattcattaaatactcacatgtttgatcaaattatctaaatttta 41709652  T
Q  371 attttaaaaataatttattctttc 394  Q
    |||||| ||| |||||||||||||    
T  41709653 attttagaaacaatttattctttc 41709676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 248 - 400
Target Start/End: Original strand, 28907893 - 28908048
Alignment:
Q  248 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 344  Q
    ||||||||||||| |||||||  ||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||| |||||||||||||  ||||    
T  28907893 gatcaaatgacactaaggtgtcaaattaaatttgacatcaaatcctaaccattaatccaactttaatccgacgtctctcaacaattcattaaatggtcac 28907992  T
Q  345 at-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||  ||||| ||||||  ||||||||||||||| ||||||  || ||||||||||||    
T  28907993 atgtttgattaaatgatgcaaattttaattttagaaataaaata-tctttcttctct 28908048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 268 - 396
Target Start/End: Complemental strand, 51829511 - 51829382
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 366  Q
    |||||||||||| |||||||| | | |||||||||||| ||||||  ||||  |||||||||||||||||| |||||||  ||||| |||||| ||||||    
T  51829511 aattaaatttgaaatcaaatccttaccattaatccaacattaatccgacgttgctcatcaattcattaaatgctcacatgcttgatgaaatgatccaaat 51829412  T
Q  367 tttaattttaaaaataatttattctttctt 396  Q
    |||||||||| |||||||||||||||||||    
T  51829411 tttaattttagaaataatttattctttctt 51829382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 53948662 - 53948818
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||     
T  53948662 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatg 53948761  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||| ||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  53948762 ctcaaatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 53948818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 53949367 - 53949211
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||||| |||     
T  53949367 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatg 53949268  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  | | ||||| | | || ||||||||||| ||| |||||||||||||||    
T  53949267 ctcacatgcttaacaaattatctaatttttaattttagaaacaatttattctttctt 53949211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 30834485 - 30834328
Alignment:
Q  243 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| |||||||||||| |||||| |  ||||||||||||||| ||||| ||| ||||||| |||| |||| |  | || |||||||||||||||||||     
T  30834485 gataggatcaaatgacatcaaggtatcaaattaaatttgacattaaatcctaaccattaattcaacattaacccgatgtttctcatcaattcattaaata 30834386  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  30834385 ctcacatgcttgatcaaattatccaaattttaattttagaaataatttattctttctt 30834328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 237 - 396
Target Start/End: Complemental strand, 28908710 - 28908547
Alignment:
Q  237 atatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcat 333  Q
    ||||| |||| |||||||| |||| |||||||  ||||||||||||||  ||||  ||| |||||||||||| |||||   |||| ||||||||||| ||    
T  28908710 atatgggataggatcaaataacactaaggtgtcaaattaaatttgacacaaaattctaaccattaatccaacattaattcgacgtttctcatcaattgat 28908611  T
Q  334 taaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    ||||| |||||||  |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  28908610 taaatgctcacatgcttgatcaaattatccaaattttaattttagaaataatttattctttctt 28908547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 43400794 - 43400716
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat 346  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  43400794 aattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatactcacat 43400716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 53948629 - 53948506
Alignment:
Q  240 tgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaa 336  Q
    ||||||||||||||||||||| || |||   |||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||  |||||||||||    
T  53948629 tgagatatgatcaaatgacaccaatgtgccaaattaaatttgacaccaaatcctaaccattaatccaactttaatctgacgtctctctacaattcattaa 53948530  T
Q  337 attctcacat-attgatcaaatga 359  Q
    || |||||||  ||||||||||||    
T  53948529 atgctcacatgcttgatcaaatga 53948506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 38798254 - 38798410
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||||||||||||| ||||| |||| ||||||| |||||||||||  |||| || |||||||||||| |||     
T  38798254 gataggatcaaatgacactatggtgtcaaattaaatttgacaccaaattataaccattaattcaactttaatccgacgtttcacatcaattcattgaatg 38798353  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    ||| |||  | | ||||| | | |||||||||||||| ||| |||||||||||||||    
T  38798354 ctcgcatgcttaacaaattatctaaattttaattttagaaacaatttattctttctt 38798410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 398
Target Start/End: Original strand, 53949371 - 53949499
Alignment:
Q  271 taaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttt 369  Q
    ||||||||||| ||||||||| |||||||| |   |||||||||||| ||| |||||||||||||| | |||||||  |||||||| ||| |||  ||||    
T  53949371 taaatttgacaccaaatcatagtcattaatacggttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgatccatctttt 53949470  T
Q  370 aattttaaaaataatttattctttcttct 398  Q
    | ||||| |||||||||||||||| ||||    
T  53949471 atttttagaaataatttattcttttttct 53949499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 400
Target Start/End: Original strand, 11238510 - 11238677
Alignment:
Q  235 atatatgagatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| |||||||||||| ||||||||  |||||||||||||| |||||| ||| ||||||| ||| ||| ||||||||  || |||||||||    
T  11238510 atatatgggataggatcaaatgacatcaaggtgtcaaattaaatttgacaccaaatcctaaccattaatacaattttcatctaacggttcccatcaattc 11238609  T
Q  332 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||| | |||||||  |  | ||||||   |  ||||||||||| |||||||||||||||||| ||||    
T  11238610 attaagtgctcacatgct-tttaaatgacatactttttaattttagaaataatttattctttctcctct 11238677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 47169211 - 47169052
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  47169211 gataagatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtg 47169112  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  47169111 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 47169052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 47167889 - 47168048
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   ||||||||||||  |||| | || ||||||| |     
T  47167889 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggttctcgtaaactcattaagtg 47167988  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  47167989 ctcacatgcttgatcaagtgatccaccttttatttttagaaataatttattctttcttct 47168048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 53950131 - 53949972
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |    ||||||||||| ||  |||||||||||||| |     
T  53950131 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacgggcttaatctaacggcttccatcaattcattaagtg 53950032  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||| ||||    
T  53950031 ctcacatgtttgatcaagtgatccatcttttatttttagaaataatttattttttattct 53949972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 400
Target Start/End: Original strand, 30833747 - 30833832
Alignment:
Q  315 acgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    |||||||||| ||||||||||||| |||||||  ||| ||||||||  ||||||||||||||| ||||||  || ||||||||||||    
T  30833747 acgtctctcaacaattcattaaatgctcacatgcttgttcaaatgatgcaaattttaattttagaaataaaata-tctttcttctct 30833832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 393
Target Start/End: Complemental strand, 24486007 - 24485855
Alignment:
Q  235 atatatgagatatgatcaaatgacacaaggtgtaattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcatt 334  Q
    |||||||||||| |||||||||||||||       ||||||||||||  |||||||| ||||||||  || ||||||||||||  |  ||||||||||||    
T  24486007 atatatgagataagatcaaatgacacaa-------ttaaatttgacactaaatcatagtcattaatataattttaatctaacggtttccatcaattcatt 24485915  T
Q  335 aaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattcttt 393  Q
    || |  | ||||  ||||||||||||   |  |||||||||||| | |||||||||||||    
T  24485914 aagtggttacatgtttgatcaaatgatttaccttttaattttaatagtaatttattcttt 24485855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 20200662 - 20200570
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattca 332  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||||||||||    
T  20200662 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattca 20200570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 20202846 - 20202754
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattca 332  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||||||||||    
T  20202846 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattca 20202754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 30833686 - 30833745
Alignment:
Q  246 atgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatcc 302  Q
    ||||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||    
T  30833686 atgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatcc 30833745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 26774724 - 26774573
Alignment:
Q  243 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    ||||||||||||||||| || |||||  ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  26774724 gatatgatcaaatgacatcatggtgtcaaatcaaatttgacatcaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatg 26774625  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttc 394  Q
    |||||   |||||||||| | | |||||||||||||| |||||||||||||||||    
T  26774624 ctcac---ttgatcaaattatctaaattttaattttagaaataatttattctttc 26774573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 235 - 400
Target Start/End: Complemental strand, 43334788 - 43334620
Alignment:
Q  235 atatatgagatatgatcaaatgacacaagg-tgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| | | |||  |||||||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  43334788 atatatgggataggatcaaatgacaccatgatgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatctaacgtctatcatcaattc 43334689  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||||| |||||||  |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  43334688 attaaatgctcacatgcttgatcaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 43334620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 268 - 396
Target Start/End: Original strand, 3474932 - 3475061
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 366  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||| | ||||    
T  3474932 aattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaat 3475031  T
Q  367 tttaattttaaaaataatttattctttctt 396  Q
    |||||||||| ||| |||||||||||||||    
T  3475032 tttaattttagaaacaatttattctttctt 3475061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 235 - 400
Target Start/End: Complemental strand, 3163559 - 3163391
Alignment:
Q  235 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  3163559 atatatgggataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctatcatcaattc 3163460  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||||| |||||||  ||||| |||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  3163459 attaaatgctcacatgcttgattaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 3163391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 26773996 - 26774153
Alignment:
Q  243 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| |||||||||||| || |||||  ||||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||     
T  26773996 gataggatcaaatgacatcatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccaacgtctctcgtcaattcattaaatg 26774095  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  |||||||||||| | |||||||||||||| |||||||||||||||||||    
T  26774096 ctcacatgcttgatcaaatgatctaaattttaattttagaaataatttattctttctt 26774153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 400
Target Start/End: Complemental strand, 30470126 - 30469994
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 366  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||  |||||||||||| ||||||    
T  30470126 aattaaatttgacaccaaatcataaccattaattcaactttaatcaaacgtctatcatcaattcattaaatgctcacatgcttgatcaaatgatccaaat 30470027  T
Q  367 tttaattttaaaaataatttattctttcttctct 400  Q
    |||||||||| ||| ||||| |||||||||||||    
T  30470026 tttaattttagaaacaattt-ttctttcttctct 30469994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 3475624 - 3475469
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  ||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  3475624 gataggatcaaatgacaccatggtgtcaaatcaaatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaata 3475525  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 394  Q
    |||||||  |||||||||| | | |||||||||||| | ||| |||||||||||||    
T  3475524 ctcacatgcttgatcaaattatctaaattttaatttaagaaacaatttattctttc 3475469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 268 - 396
Target Start/End: Original strand, 37422589 - 37422717
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 367  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||| |||||||  | ||||||| | | || ||    
T  37422589 aattaaatttgacatcaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatgcttatcaaattatctaattt 37422688  T
Q  368 ttaattttaaaaataatttattctttctt 396  Q
    ||||||||| ||| |||||||||||||||    
T  37422689 ttaattttagaaacaatttattctttctt 37422717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 3162871 - 3163027
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||| ||||||||| |||||||||||||| |||||||||     
T  3162871 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatg 3162969  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  3162970 ctcacatgcttgaacaaataatccaaattttaattttagaaataatttattccttctt 3163027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 43334132 - 43334288
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||     
T  43334132 gataggatcaaatgacaccaaggtgtcaaattaagtttgacatcaaatcataaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatg 43334230  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||   ||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  43334231 ctcacatgcctgaacaaataatccaaattttaattttagaaataatttattccttctt 43334288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 46428172 - 46428012
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||||||||||||| ||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||||||     
T  46428172 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaattataaccattaattcaactttaatccaacgtctatcatcaattcattaaatg 46428073  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    |||||||  |||||||||||| | |||||||||||||| ||| ||||| |||||||||||||    
T  46428072 ctcacatgcttgatcaaatgatctaaattttaattttagaaacaattt-ttctttcttctct 46428012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 235 - 389
Target Start/End: Original strand, 30469506 - 30469663
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||| ||||||| | |||||||||||||| ||    
T  30469506 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatcca-ctttaatttgacgtctctcatcaaatc 30469604  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttatt 389  Q
    ||||||| |||||||  |||| ||||| | |||||||||||||||| ||||||||||||    
T  30469605 attaaatgctcacatgcttgaacaaataatccaaattttaattttagaaataatttatt 30469663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 30659857 - 30660013
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||     
T  30659857 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatg 30659956  T
Q  340 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    ||| |||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  30659957 ctcgcatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 30660013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 8487862 - 8487703
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| ||  |||||||||||| |||||||||||||||||| |     
T  8487862 gataggatcaaatgacacgaaggtgtcaaattaaatttgacaccaaatcctagccattaatacagttttaatctaacggctctcatcaattcattaagtg 8487763  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  8487762 ctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 8487703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 398
Target Start/End: Complemental strand, 21866409 - 21866278
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaat 366  Q
    ||||||| ||||||  ||||| ||| ||||||| ||  |||||||||| || ||||||||||||||||| | ||||||| || |||||||||| |||  |    
T  21866409 aattaaagttgacacaaaatcctaaccattaatacagttttaatctaatgtttctcatcaattcattaagtgctcacatgtttgatcaaatgacccacct 21866310  T
Q  367 tttaattttaaaaataatttattctttcttct 398  Q
    ||||||||||||||||||||||||||||||||    
T  21866309 tttaattttaaaaataatttattctttcttct 21866278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 396
Target Start/End: Complemental strand, 30660534 - 30660406
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 367  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||  |||||||||||||||||||| ||| ||| |||  | | ||||| | | |||||    
T  30660534 aattaaatttgagaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatgctcccatgcttaacaaattatctaaatt 30660435  T
Q  368 ttaattttaaaaataatttattctttctt 396  Q
    ||||||||| ||| |||||||||||||||    
T  30660434 ttaattttagaaacaatttattctttctt 30660406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 8487023 - 8487190
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |    ||||||||||| |||||||||||||    
T  8487023 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacgggcttaatctaacggctctcatcaattc 8487122  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  8487123 attaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttgttct 8487190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 8512698 - 8512865
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |    ||||||||||| |||||||||||||    
T  8512698 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacgggcttaatctaacggctctcatcaattc 8512797  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  8512798 attaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttattct 8512865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 8513517 - 8513358
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  || |||| ||  |||||||||||| ||| |||||||||||||| |     
T  8513517 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccaataatacagttttaatctaacggctcccatcaattcattaagtg 8513418  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  8513417 ctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 8513358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 386
Target Start/End: Original strand, 38816720 - 38816835
Alignment:
Q  272 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 370  Q
    |||||||||| ||||||||||  ||||||| ||||||||||| | ||||||||||||||||| |||| |||||||  |||||||||| | | ||||||||    
T  38816720 aaatttgacaccaaatcataactattaatctaactttaatctgatgtctctcatcaattcatcaaatgctcacatgcttgatcaaattatctaaatttta 38816819  T
Q  371 attttaaaaataattt 386  Q
    |||||| ||| |||||    
T  38816820 attttagaaacaattt 38816835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 398
Target Start/End: Complemental strand, 25245724 - 25245556
Alignment:
Q  235 atatatgagatatgatcaaa-tgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaatt 330  Q
    ||||||| |||||||||||| |||||| || ||||  ||||||||| |||| |||||| ||  ||||||| |   |||||||||| | ||||||| ||||    
T  25245724 atatatgggatatgatcaaaatgacaccaatgtgtcaaattaaattagacaccaaatcttagccattaatactgttttaatctaatgactctcattaatt 25245625  T
Q  331 cattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||| | ||||||| || |||||| ||| |||  ||||||||||| |||||||||||||||||||||    
T  25245624 cattaagtgctcacatgtttgatcaagtgatccaccttttaattttagaaataatttattctttcttct 25245556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 31178642 - 31178800
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||||||||||||||||| ||| |||  |||||||||||||| |||||| ||  ||||||| ||  |||||||||||| ||| ||| || |||||||||     
T  31178642 gatatgatcaaatgacaccaagatgtcaaattaaatttgacaccaaatcctagccattaatacagttttaatctaacggctcccataaactcattaaata 31178741  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||| ||||||||||||||    
T  31178742 ctcacatgcttgatcaagtgacccaccttttatttttagaaataa-ttattctttcttct 31178800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 38059849 - 38060008
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  38059849 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtg 38059948  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  38059949 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 38060008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 28451192 - 28451285
Alignment:
Q  306 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||| |||||||||||||||||| | |||||||| |||||||| ||| | |  ||||| ||||| |||||||| ||||||||||||    
T  28451192 tttaatctaacggctctcatcaattcattaagtactcacatacttgatcaagtgaccaatcttttatttttagaaataattcattctttcttct 28451285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 21865651 - 21865727
Alignment:
Q  323 catcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||||| | ||||||| || |||||| ||| |||  |||||||||||||||||||||||||||||||||    
T  21865651 catcaattcattaagtgctcacatttttgatcaagtgacccaccttttaattttaaaaataatttattctttcttct 21865727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 46427550 - 46427644
Alignment:
Q  295 attaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttatt 389  Q
    ||||||||| ||||||| | | |||||||||||| ||||||||| |||||||  |||| ||||| | |||||||||||||||| ||||||||||||    
T  46427550 attaatcca-ctttaatatgatgtctctcatcaaatcattaaatgctcacatgcttgaacaaataatccaaattttaattttagaaataatttatt 46427644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 248 - 400
Target Start/End: Original strand, 42519647 - 42519803
Alignment:
Q  248 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 344  Q
    ||||||||||||| |||||||  |||||||||||||| |||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| ||||     
T  42519647 gatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaa 42519746  T
Q  345 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||| ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  42519747 atacttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttctct 42519803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 42520485 - 42520328
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| |||||||| |||| |||||||  |||||||||||||| |||||  ||| ||||||| |||| |||||| |||||||||||||||||||||||||     
T  42520485 gataggatcaaataacaccaaggtgtcaaattaaatttgacaccaaattctaaccattaattcaacattaatccaacgtctctcatcaattcattaaatg 42520386  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    |||||||  ||||| |||||| ||||| |||||||||| ||||||| |||||||||||    
T  42520385 ctcacatgcttgatgaaatgatccaaactttaattttagaaataatgtattctttctt 42520328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 398
Target Start/End: Complemental strand, 42521753 - 42521586
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||||||| || ||    
T  42521753 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctctcataaactc 42521654  T
Q  332 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  42521653 attaagtgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 42521586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 235 - 398
Target Start/End: Complemental strand, 21148159 - 21147992
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    |||||||||||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||    
T  21148159 atatatgagataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactc 21148060  T
Q  332 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||| |  ||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  21148059 attaagtgttcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 21147992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 23206248 - 23206089
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||||||| || ||||||| |     
T  23206248 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctctcataaactcattaagtg 23206149  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  23206148 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 23206089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 42520619 - 42520778
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgtaat--taaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| ||||||| ||  ||||||| ||| |||||| ||  ||||||| |   |||||||||||| ||||||| || ||||||| |     
T  42520619 gataggatcaaatgacaccaaggtgtcatattaaattttacaccaaatcctagccattaatacggttttaatctaacgactctcataaactcattaagtg 42520718  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  42520719 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 42520778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 21145938 - 21146097
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  21145938 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtg 21146037  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| ||||||||||  |||||||||    
T  21146038 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttaaactttcttct 21146097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 31218780 - 31218851
Alignment:
Q  323 catcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattcttt 393  Q
    ||||||||||| |||| ||||||   |||||||||||| |||  ||||||||||| ||||||||||||||||    
T  31218780 catcaattcatcaaatgctcacaaggttgatcaaatgacccaccttttaattttagaaataatttattcttt 31218851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 31219934 - 31219884
Alignment:
Q  348 ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||| | |  |||||||||||||| ||||||||||||||||||    
T  31219934 ttgatcaaatgacctaccttttaattttaaaattaatttattctttcttct 31219884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 396
Target Start/End: Original strand, 21824551 - 21824715
Alignment:
Q  235 atatatgagatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||||| |||||  ||| |||||||||| ||||||||| |||||||||||||| ||    
T  21824551 atatatgggatatgatcaaatgacatcaaggtgtcaaattaaatttgacaccaaattctaaccattaatcca-ctttaatctgacgtctctcatcaaatc 21824649  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    ||||||| |||||||  |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  21824650 attaaatgctcacatgcttgaacaaataatccaaattttaattttagaaataatttattccttctt 21824715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 21825201 - 21825041
Alignment:
Q  243 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| | |||||  |||||||||||||| ||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||||||     
T  21825201 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaattataaccattaattcaactttaatccaacgtctatcatcaattcattaaatg 21825102  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    |||||||  |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  21825101 ctcacatgcttgatcaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 21825041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 42882750 - 42882909
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||||||||||||||||| || ||||  |||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||     
T  42882750 gatatgatcaaatgacaccaatgtgttaaattaaatttgacaccaaatcataaccattaatccaattttaatctaacgtccctcatcaattcattaaatg 42882849  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
     || |||   ||||||||||| | ||| |||||||||| |||||||||||| ||||||||    
T  42882850 ttcccatgcctgatcaaatgatcaaaaatttaattttagaaataatttattttttcttct 42882909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 294 - 400
Target Start/End: Complemental strand, 42883468 - 42883361
Alignment:
Q  294 cattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctt 392  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||  ||||||  ||||||||||||  ||||||||||||||| |||||||||||||||    
T  42883468 cattaatccaactttaatctgacgtccctcatcaattcattaaatgttcacatgcttgatcaaatgattcaaattttaattttataaataatttattctt 42883369  T
Q  393 tcttctct 400  Q
    ||||||||    
T  42883368 tcttctct 42883361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 45919513 - 45919672
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  ||||||||||||||||||||| || |||||||| |   |||||||||||| |||||||||||||||||| |     
T  45919513 gataggatcaaatgacaccaaggtgtcaaattaaatttgacatcaaatcctagtcattaatacggttttaatctaacggctctcatcaattcattaagtg 45919612  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  45919613 ctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 45919672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 45920310 - 45920182
Alignment:
Q  271 taaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttt 369  Q
    ||||||||||| |||||  ||  ||||||| ||  |||||||||||| ||| |||||||||||||| | |||||||  |||||||| ||| |||  ||||    
T  45920310 taaatttgacaccaaattctagccattaatacagttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatctttt 45920211  T
Q  370 aattttaaaaataatttattctttcttct 398  Q
    | ||||| |||||||||||||||||||||    
T  45920210 atttttagaaataatttattctttcttct 45920182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 46619681 - 46619522
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||||||   |||||| |   |||||||||||| ||| ||| || ||||||| |     
T  46619681 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcatagcaattaatacggttttaatctaacggctcccataaactcattaagtg 46619582  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||||||||    
T  46619581 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattttttcttct 46619522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 398
Target Start/End: Original strand, 46618380 - 46618511
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaat 366  Q
    |||| |||||||||||||||| ||  ||||||| |   ||||||||||||  |||||| || ||||||| | ||||||| || |||||| ||| ||| ||    
T  46618380 aatttaatttgacatcaaatcctagccattaatacggttttaatctaacggttctcataaactcattaagtgctcacatgtttgatcaagtgatccacat 46618479  T
Q  367 tttaattttaaaaataatttattctttcttct 398  Q
    |||| ||||| |||||||||||||||||||||    
T  46618480 tttatttttagaaataatttattctttcttct 46618511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 398
Target Start/End: Original strand, 42058516 - 42058645
Alignment:
Q  268 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 367  Q
    |||||||||||||| |||||| |||  ||||||  || ||||||||||||  |||||| ||||||||||||  ||||||  |  ||||||||   |  ||    
T  42058516 aattaaatttgacaccaaatcctaactattaatataattttaatctaacggttctcataaattcattaaatgttcacatgctt-tcaaatgatatacctt 42058614  T
Q  368 ttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||||||||||||||||||||||    
T  42058615 ttaattttaaaaataatttattctttcttct 42058645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 41695386 - 41695545
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| |||| |||||| |   |||||||||||| ||  |||||||||||||| |     
T  41695386 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaattattaatacggttttaatctaacggcttccatcaattcattaagtg 41695485  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
     ||||||  |||||||| ||  |||  ||||| ||||| |||||||||||||||| ||||    
T  41695486 ttcacatgtttgatcaagtggcccattttttatttttagaaataatttattcttttttct 41695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 41696174 - 41696015
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| |||||||||| || |||||||  |||||||||||||| |||||| ||   |||||| |   |||||||||||| ||| |||||||||||||| |     
T  41696174 gataggatcaaatgataccaaggtgtcaaattaaatttgacaccaaatcttagctattaatacggttttaatctaacggctcccatcaattcattaagtg 41696075  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||   |||| |||| ||||||||||||||||||||||    
T  41696074 ctcacatgcttgatcaagtgacccatcctttattttttaaaataatttattctttcttct 41696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 4158665 - 4158504
Alignment:
Q  243 gatatgatcaaatgacaca-aggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| |||||||||||||  ||||||  |||||||||||||| |||||| ||  ||||||| ||| ||||||||||||  |  ||| |||| ||||| |     
T  4158665 gataggatcaaatgacacttaggtgtcaaattaaatttgacaccaaatcctagccattaatacaattttaatctaacggtttccattaatttattaagtg 4158566  T
Q  340 ctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 400  Q
    ||||||| || ||||||||||   |  ||||||||||| ||||||||||||||||| |||||    
T  4158565 ctcacatgtttgatcaaatgacatatcttttaattttagaaataatttattctttcatctct 4158504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 31915171 - 31915272
Alignment:
Q  248 gatcaaatgacacaaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcaca 345  Q
    ||||||||||||||||||||  |||||||||||||| |||||  || |||||||| |   ||||||||||||  |||||| |||| ||||| | ||||||    
T  31915171 gatcaaatgacacaaggtgtcaaattaaatttgacaccaaattctagtcattaatacggttttaatctaacggttctcattaatttattaagtgctcaca 31915270  T
Q  346 ta 347  Q
    ||    
T  31915271 ta 31915272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 29212062 - 29212155
Alignment:
Q  306 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||  ||| |||||||||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||||||||    
T  29212062 tttaatctaacagctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattatttcttct 29212155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 400
Target Start/End: Original strand, 4157900 - 4157934
Alignment:
Q  366 ttttaattttaaaaataatttattctttcttctct 400  Q
    ||||||||||| |||||||||||||||||||||||    
T  4157900 ttttaattttagaaataatttattctttcttctct 4157934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 400
Target Start/End: Complemental strand, 24377971 - 24377843
Alignment:
Q  272 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaatttta 370  Q
    |||||| |||||||||| || ||||||||  |  |||||||||||  |||| |||||||| |||| |  ||||||  ||||| |||||| |||  |||||    
T  24377971 aaatttaacatcaaatcttattcattaatatagttttaatctaacagctctaatcaattcgttaagtgatcacatgcttgat-aaatgaaccacctttta 24377873  T
Q  371 attttaaaaataatttattctttcttctct 400  Q
    |||||| ||| ||| |||||||||||||||    
T  24377872 attttagaaacaatctattctttcttctct 24377843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 52362743 - 52362802
Alignment:
Q  246 atgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatcc 302  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||  ||| |||||||||    
T  52362743 atgatcaaatgacatcaaggtgttaaattaaatttgacatcaaattttaaccattaatcc 52362802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 277 - 400
Target Start/End: Complemental strand, 1798 - 1674
Alignment:
Q  277 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaatttt 375  Q
    ||||| |||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| |||| ||| ||||||||||||  ||||||||||||||    
T  1798 tgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaaatacttgatcaaatgatgcaaattttaatttt 1699  T
Q  376 aaaaataatttattctttcttctct 400  Q
    | ||||||  |||||||||||||||    
T  1698 agaaataaaatattctttcttctct 1674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 396
Target Start/End: Original strand, 992 - 1154
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| || ||||  |||||||||||||| |||||| ||| ||||||| |||| |||||| |||||||||||||||||     
T  992 atatatgggataggatcaaatgacaccaaagtgtcaaattaaatttgacaccaaatcctaaccattaattcaacattaatccaacgtctctcatcaattt 1091  T
Q  332 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 396  Q
    ||||||| |||||||  |  | |||||| ||||| |||||||||| |||||||||||||||||||    
T  1092 attaaatgctcacatgct--tgaaatgatccaaactttaattttagaaataatttattctttctt 1154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 105504 - 105671
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| ||||||| |   |||||||||||| ||| |||||||||    
T  105504 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcttaaccattaatacggttttaatctaacggctcccatcaattc 105603  T
Q  332 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||  |  ||||||  |||||||| |||  ||  ||||| ||||| |||||||||||||||||||||    
T  105604 attatgtgttcacatgcttgatcaagtgacgcatcttttatttttagaaataatttattctttcttct 105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 243 - 398
Target Start/End: Complemental strand, 106343 - 106184
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||| ||| ||||||| |    ||||||||||| | | |||||||||||||| |     
T  106343 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatacgggcttaatctaacggcgcccatcaattcattaagtg 106244  T
Q  340 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  106243 ctcacatgcttgatcaagtgatccatcttttatttttagaaataatttattctttattct 106184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 20724 - 20889
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    |||||||||||| ||||||||||||| |||||||  ||||||||||||||  ||||| ||  ||||||| | | |||||||||| | |||  || |||||    
T  20724 atatatgagataggatcaaatgacaccaaggtgtcaaattaaatttgacactaaatcctagccattaatactattttaatctaatggctc--attaattc 20821  T
Q  332 attaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||| |  |||||| || |||||| ||| |||  ||||||||||| |||||||||||||||||||||    
T  20822 attaagtgatcacatgtttgatcaagtgatccaccttttaattttagaaataatttattctttcttct 20889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 25616 - 25775
Alignment:
Q  243 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 339  Q
    |||| ||||||||||||| || ||||  |||||||||||||| ||||||  |  ||||||| ||  ||||||||||||||||||||||||||||||| |     
T  25616 gataggatcaaatgacaccaatgtgtcaaattaaatttgacaccaaatcccagccattaatacagttttaatctaacgtctctcatcaattcattaagtg 25715  T
Q  340 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
     ||||||  |||||||| |||   |  ||||| ||||| |||||||||||||||||||||    
T  25716 ttcacatgcttgatcaagtgacaaatgttttatttttagaaataatttattctttcttct 25775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 609 - 771
Alignment:
Q  235 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 331  Q
    ||||||| |||| ||||||||||||| || ||||  |||||||||||||| || ||| ||  ||||||| |   |||||||||||| ||| ||| || ||    
T  609 atatatgggataggatcaaatgacaccaatgtgtcaaattaaatttgacaccagatcctagccattaatacggttttaatctaacggctcccataaactc 708  T
Q  332 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    ||||| | ||||||    |||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  709 attaagtgctcaca----gatcaagtgatccaccttttatttttagaaataatttattctttcttct 771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 2312 - 2219
Alignment:
Q  306 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 398  Q
    |||||||||||| ||  ||| || ||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  2312 tttaatctaacggcttccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 2219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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