View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1028_high_2 (Length: 265)
Name: NF1028_high_2
Description: NF1028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1028_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 37719749 - 37719978
Alignment:
| Q |
29 |
agtttgttgcaagtagaaattcaaacccttttactacagggcatgtggttaaggattccatggaatnnnnnnnntgatctatttgagcatagaaatcatt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37719749 |
agtttgttgcaagtagaaattcaaacccttttactacagggcatgtggttaaggattccatggaataaaaaaaatgatctatttgagcatagaaatcatt |
37719848 |
T |
|
| Q |
129 |
aaataattaaaatcacaataaatataagaagcaaatttgacaaacgcctttatactatgtttgaaatt--agtgtgatgtaatattaatgtaattcattc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37719849 |
aaataattaaaatcacaataaatataagaagcaaatttgacaaacgcctttatactatgtttgaaattagagtgtgatgtaatattaatgtaattcattc |
37719948 |
T |
|
| Q |
227 |
aataaaattgataatttgggtaagtataat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37719949 |
aataaaattgataatttgggtaagtataat |
37719978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University