View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1028_low_1 (Length: 429)
Name: NF1028_low_1
Description: NF1028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1028_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 48222895 - 48223061
Alignment:
| Q |
30 |
gtctccaccatttgtactagaaaccaaagtaagaaaaattaagagaaagataattgaatttgaaagcctacgtgtttcatttcccattgcaatactatta |
129 |
Q |
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| T |
48222895 |
gtctccaccatttgtactagaaaccaaagtaagaaaaattaagagaaagataattgaatttgaaagcctacgtgtttcatttcccattgcaatactatta |
48222994 |
T |
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| Q |
130 |
tcagcttgatgcttatcctaaggaaccatttataatagaggccacgggataatgttgttaagcaatc |
196 |
Q |
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| T |
48222995 |
tcagcttgatgcttatcctaaggaaccatttataatagaggccacgggataatgttgttaagcaatc |
48223061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 260 - 353
Target Start/End: Original strand, 48223125 - 48223218
Alignment:
| Q |
260 |
cgtagtgtaacaacaaaagccgcgacgtgactgaagacaaaataccaagagcaaaataagagttgattatttaaaaattcttcatggacatatc |
353 |
Q |
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| T |
48223125 |
cgtagtgtaacaacaaaagccgcgacgtgactgaagacaaaataccaagagcaaaataagagttgattatttggaaattcttcatggacatatc |
48223218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 48223243 - 48223279
Alignment:
| Q |
378 |
taggtagcatcttaagattagaataacactatccaat |
414 |
Q |
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| T |
48223243 |
taggtagcatcttaagattagaataacactatccaat |
48223279 |
T |
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