View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1028_low_3 (Length: 338)
Name: NF1028_low_3
Description: NF1028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1028_low_3 |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 50807953 - 50808275
Alignment:
| Q |
16 |
atatgattgtgagtggtttcaaaaattccaaatcatggtttcaaaaattccaaatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50807953 |
atatgattgtgagtggtttcaaaaattccaaatcatggtttcaaaaattccaaatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagt |
50808052 |
T |
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| Q |
116 |
tacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtctgaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808053 |
tacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtctgaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgc |
50808152 |
T |
|
| Q |
216 |
acatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttttaacacaatgaaacaatcatcaatggaggaaaccaagcaaagactaac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
50808153 |
acatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttttaacacaatgaaacaatcatcaatggaggtaaccaagcaaaggctaac |
50808252 |
T |
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| Q |
316 |
aaacaatgtaaccaagcacaaac |
338 |
Q |
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|||||||||||| |||||||||| |
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| T |
50808253 |
aaacaatgtaacaaagcacaaac |
50808275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 68 - 338
Target Start/End: Complemental strand, 50867858 - 50867588
Alignment:
| Q |
68 |
aatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
167 |
Q |
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| T |
50867858 |
aatcatgtaacatgccattgaacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
50867759 |
T |
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| Q |
168 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867758 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
50867659 |
T |
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| Q |
268 |
taacacaatgaaacaatcatcaatggaggaaaccaagcaaagactaacaaacaatgtaaccaagcacaaac |
338 |
Q |
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| T |
50867658 |
taacacaatgaaacaatcatcaatggaagtaaccaagcaaaggctaacaaacaatgtaacaaagcacaaac |
50867588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 50867925 - 50867886
Alignment:
| Q |
16 |
atatgattgtgagtggtttcaaaaattccaaatcatggtt |
55 |
Q |
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| T |
50867925 |
atatgattgtgagtggtttcaaaaattccaaatcatggtt |
50867886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 68 - 338
Target Start/End: Complemental strand, 19055412 - 19055142
Alignment:
| Q |
68 |
aatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
167 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19055412 |
aatcatgtaacatgccattgaacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
19055313 |
T |
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| Q |
168 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
267 |
Q |
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| T |
19055312 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
19055213 |
T |
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| Q |
268 |
taacacaatgaaacaatcatcaatggaggaaaccaagcaaagactaacaaacaatgtaaccaagcacaaac |
338 |
Q |
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||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19055212 |
taacacaatgaaacaatcatcaatggaagtaaccaagcaaaggctaacaaacaatgtaacaaagcacaaac |
19055142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 19055479 - 19055440
Alignment:
| Q |
16 |
atatgattgtgagtggtttcaaaaattccaaatcatggtt |
55 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
19055479 |
atatgattgtgagtggtttcaaaaattccaaatcatggtt |
19055440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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