View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1028_low_4 (Length: 311)
Name: NF1028_low_4
Description: NF1028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1028_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 69 - 244
Target Start/End: Original strand, 6869468 - 6869642
Alignment:
| Q |
69 |
caacaatatacacagagacctcaaaaactgttaatcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttc |
168 |
Q |
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||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| |
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| T |
6869468 |
caacattatacatagagacttcaaaa-ctgttaatcttttgatggattagaaaggggtaagtgactattaatttatcatttcttttgattttacaagttc |
6869566 |
T |
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| Q |
169 |
ttgttcttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatgg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6869567 |
ttgttcttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatgg |
6869642 |
T |
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Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 41222083 - 41222251
Alignment:
| Q |
75 |
tatacacagagacctcaaaaactgttaatcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttcttgttc |
174 |
Q |
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|||||| |||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41222083 |
tatacatagagacctcaaaaa-tgttagtattttgatggatgagaaaggggtaagtgactattaatttgtcatttcttttgattttacaggttcttgttc |
41222181 |
T |
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| Q |
175 |
ttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatgg |
244 |
Q |
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| T |
41222182 |
ttagttaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatgg |
41222251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 3106667 - 3106489
Alignment:
| Q |
69 |
caacaatatacacagagacctcaaaaactgttaatcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttc |
168 |
Q |
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||||| |||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
3106667 |
caacattatacatagagacctcaaaa-ctgtaaatcttttgatggatgagaaaggggtaagtgactattaatttgccatttcttttgattttacaggttc |
3106569 |
T |
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| Q |
169 |
ttgttcttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattatggagat |
248 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
3106568 |
ttgttcttagttaatgctttcaaatcatactataacaatataaatcactctaaaactctagttgtgtatattatgaagat |
3106489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 69 - 242
Target Start/End: Complemental strand, 8450131 - 8449959
Alignment:
| Q |
69 |
caacaatatacacagagacctcaaaaactgttaatcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttc |
168 |
Q |
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||||| |||||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8450131 |
caacattatacatcgagacctcaaaa-ctgctaatcttttgatggatgagaaaggggtaagtgactattaatttgtcatttcttttgattttacaggttc |
8450033 |
T |
|
| Q |
169 |
ttgttcttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatattat |
242 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8450032 |
ttgttcttgaataatgctttcaaatcatactataacaatataaaccactctaaaactgtagttgtgtatattat |
8449959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 103 - 248
Target Start/End: Complemental strand, 48731181 - 48731035
Alignment:
| Q |
103 |
tcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttcttgttcttaggtaatgctttcaaatcatactata |
202 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||| |
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| T |
48731181 |
tcttttgatggatgagaaatgggtaagtgactattaatttgtcatttctttgaattttacaagttcttgttcttagttgatgctttcaaatcatactata |
48731082 |
T |
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| Q |
203 |
-acaatataaaccactctaaaactctagttgtgtatattatggagat |
248 |
Q |
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| T |
48731081 |
taaaatataaaccactctaaaactctagttgtgtatgttatgaagat |
48731035 |
T |
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