View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1028_low_5 (Length: 304)
Name: NF1028_low_5
Description: NF1028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1028_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 11848355 - 11848187
Alignment:
| Q |
80 |
aaagatgcataggcaatgaagtttcacaacaatatcttccattacaaccattactactcaaattgaagta---gctgtttatgttgttgtcatcgcaaat |
176 |
Q |
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| T |
11848355 |
aaagatgcataggcaatgaagtttcacaacaatatcttccattacaaccatcactactcaaattgaagtaattgctgtttatgttgttgtcatcgcaaat |
11848256 |
T |
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| Q |
177 |
tgatacacaaccaccaaccattgttccacttgattgtataaaagcaagattgttacatgcaacagctag |
245 |
Q |
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| T |
11848255 |
tgatacacaaccaccaaccatgtttccacttgattgtataaaagcaagattgttacatccaacagctag |
11848187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 11843670 - 11843505
Alignment:
| Q |
80 |
aaagatgcataggcaatgaagtttcacaacaatatcttccattacaaccattactactcaaattgaagtagctgtttatgttgttgtcatcgcaaattga |
179 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||| | |||| ||||||||| | |||| | |||| |||||||||||||| |
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| T |
11843670 |
aaagatgcgtaggcaatgaagtttcacaacaatatcttccattgcaacggtcgttactggaattgaagttgttgttaaagttgccatcatcgcaaattga |
11843571 |
T |
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| Q |
180 |
tacacaaccaccaaccattgttccacttgattgtataaaagcaagattgttacatgcaacagctag |
245 |
Q |
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| T |
11843570 |
tacgcaaccaccaaccgttgttccatttgattgtagaaaagcaagattgttacatccaacggctag |
11843505 |
T |
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