View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1028_low_7 (Length: 290)

Name: NF1028_low_7
Description: NF1028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1028_low_7
NF1028_low_7
[»] chr8 (36 HSPs)
chr8 (30-281)||(10013265-10013525)
chr8 (155-228)||(27193145-27193218)
chr8 (157-227)||(11727659-11727729)
chr8 (155-231)||(29125974-29126050)
chr8 (156-229)||(17718577-17718650)
chr8 (156-229)||(26740230-26740303)
chr8 (30-81)||(44841625-44841676)
chr8 (155-229)||(31028728-31028802)
chr8 (156-229)||(3720754-3720827)
chr8 (156-229)||(27911765-27911838)
chr8 (156-229)||(27958184-27958257)
chr8 (164-229)||(43553113-43553178)
chr8 (155-229)||(14228414-14228487)
chr8 (155-229)||(14263618-14263692)
chr8 (155-229)||(14511522-14511596)
chr8 (155-229)||(23429983-23430057)
chr8 (155-229)||(33935152-33935226)
chr8 (155-229)||(35052127-35052201)
chr8 (155-229)||(38482884-38482958)
chr8 (162-229)||(40521341-40521410)
chr8 (164-229)||(12763508-12763573)
chr8 (157-229)||(4057362-4057434)
chr8 (164-220)||(36058315-36058371)
chr8 (155-222)||(42352819-42352886)
chr8 (155-229)||(9954723-9954797)
chr8 (155-229)||(12342706-12342780)
chr8 (155-229)||(18291538-18291611)
chr8 (155-229)||(21651838-21651912)
chr8 (155-229)||(26062781-26062855)
chr8 (155-229)||(34046925-34046999)
chr8 (180-229)||(2335507-2335556)
chr8 (180-229)||(11707602-11707651)
chr8 (180-229)||(15623728-15623777)
chr8 (180-229)||(15647516-15647565)
chr8 (180-229)||(16701010-16701059)
chr8 (156-229)||(35296118-35296191)
[»] chr3 (29 HSPs)
chr3 (155-258)||(26748388-26748501)
chr3 (155-223)||(34750735-34750803)
chr3 (155-229)||(3643294-3643368)
chr3 (156-229)||(33874645-33874718)
chr3 (157-225)||(51064961-51065029)
chr3 (155-229)||(5244033-5244107)
chr3 (155-229)||(27992314-27992388)
chr3 (155-229)||(28885752-28885826)
chr3 (155-229)||(43775488-43775562)
chr3 (155-229)||(45101456-45101530)
chr3 (155-229)||(54898184-54898258)
chr3 (164-229)||(51244698-51244763)
chr3 (173-229)||(51219200-51219256)
chr3 (155-229)||(32853458-32853530)
chr3 (155-218)||(32854046-32854109)
chr3 (155-229)||(40010762-40010836)
chr3 (155-229)||(41168835-41168909)
chr3 (155-229)||(52173821-52173895)
chr3 (155-229)||(52663516-52663590)
chr3 (155-229)||(54106337-54106411)
chr3 (164-229)||(13168091-13168156)
chr3 (180-229)||(30861665-30861714)
chr3 (155-220)||(40139932-40139997)
chr3 (155-228)||(46973498-46973571)
chr3 (164-229)||(47069964-47070029)
chr3 (164-220)||(29651751-29651807)
chr3 (156-220)||(43159859-43159923)
chr3 (181-229)||(48152059-48152107)
chr3 (181-229)||(48214141-48214189)
[»] chr1 (33 HSPs)
chr1 (140-231)||(38569694-38569785)
chr1 (161-222)||(45230066-45230127)
chr1 (155-227)||(2572047-2572119)
chr1 (164-228)||(8973549-8973613)
chr1 (155-233)||(10630482-10630559)
chr1 (156-229)||(37735229-37735302)
chr1 (157-229)||(4101000-4101072)
chr1 (155-228)||(41155350-41155423)
chr1 (162-229)||(32168408-32168475)
chr1 (148-229)||(1677272-1677353)
chr1 (162-229)||(42800181-42800246)
chr1 (173-228)||(43808974-43809029)
chr1 (155-229)||(12721514-12721588)
chr1 (155-229)||(24781823-24781897)
chr1 (155-229)||(37609390-37609464)
chr1 (155-229)||(43500580-43500654)
chr1 (155-229)||(45368162-45368236)
chr1 (162-220)||(48174768-48174826)
chr1 (155-228)||(21927785-21927858)
chr1 (157-229)||(33720591-33720662)
chr1 (155-229)||(1859169-1859241)
chr1 (162-229)||(13507844-13507911)
chr1 (162-229)||(13515032-13515099)
chr1 (174-229)||(32994577-32994632)
chr1 (174-229)||(49908290-49908345)
chr1 (162-229)||(51613485-51613552)
chr1 (155-229)||(18033915-18033989)
chr1 (155-229)||(30686485-30686559)
chr1 (155-229)||(44818528-44818602)
chr1 (164-229)||(15660661-15660726)
chr1 (180-229)||(19455513-19455562)
chr1 (164-229)||(35700473-35700538)
chr1 (155-215)||(5598143-5598203)
[»] chr7 (26 HSPs)
chr7 (155-258)||(46715397-46715510)
chr7 (155-227)||(22785956-22786028)
chr7 (157-227)||(32049489-32049559)
chr7 (156-229)||(18194310-18194383)
chr7 (157-229)||(31815165-31815237)
chr7 (155-227)||(30586771-30586843)
chr7 (162-220)||(42841968-42842026)
chr7 (156-229)||(35746741-35746813)
chr7 (155-229)||(18470381-18470455)
chr7 (164-229)||(20035122-20035187)
chr7 (164-229)||(20045533-20045598)
chr7 (155-228)||(26632275-26632348)
chr7 (156-229)||(46285941-46286014)
chr7 (156-227)||(9142359-9142428)
chr7 (145-229)||(17354111-17354195)
chr7 (174-229)||(33173881-33173936)
chr7 (155-258)||(37353965-37354067)
chr7 (155-229)||(7312691-7312765)
chr7 (155-229)||(7477293-7477367)
chr7 (155-229)||(12838173-12838247)
chr7 (155-229)||(17896618-17896692)
chr7 (155-229)||(31430633-31430707)
chr7 (155-229)||(34368754-34368828)
chr7 (155-229)||(36922313-36922387)
chr7 (164-229)||(32528432-32528497)
chr7 (162-229)||(22382176-22382241)
[»] chr4 (41 HSPs)
chr4 (155-227)||(51654965-51655037)
chr4 (155-229)||(39309008-39309082)
chr4 (157-227)||(48509964-48510034)
chr4 (156-229)||(33809164-33809237)
chr4 (162-229)||(9220141-9220208)
chr4 (155-229)||(3436160-3436234)
chr4 (155-229)||(30939232-30939306)
chr4 (173-229)||(34361130-34361186)
chr4 (155-227)||(38865982-38866054)
chr4 (162-229)||(43888059-43888126)
chr4 (155-229)||(29295431-29295505)
chr4 (155-229)||(35232391-35232465)
chr4 (155-229)||(46871998-46872072)
chr4 (155-229)||(52677238-52677312)
chr4 (164-229)||(5374452-5374517)
chr4 (147-228)||(18781557-18781638)
chr4 (156-229)||(19399610-19399683)
chr4 (163-220)||(41955775-41955832)
chr4 (164-229)||(44217783-44217848)
chr4 (155-215)||(19731465-19731525)
chr4 (165-229)||(26933874-26933938)
chr4 (155-231)||(55430396-55430472)
chr4 (174-229)||(23623607-23623662)
chr4 (155-206)||(26906482-26906533)
chr4 (174-229)||(31862098-31862153)
chr4 (174-229)||(55147173-55147228)
chr4 (155-229)||(13629286-13629360)
chr4 (155-229)||(21044840-21044914)
chr4 (155-205)||(27492461-27492511)
chr4 (155-229)||(35381508-35381582)
chr4 (155-229)||(40412020-40412094)
chr4 (175-229)||(51347339-51347393)
chr4 (175-229)||(53599899-53599953)
chr4 (164-229)||(35231767-35231832)
chr4 (156-229)||(36750626-36750699)
chr4 (159-221)||(56499709-56499773)
chr4 (153-229)||(1146140-1146216)
chr4 (156-216)||(6129056-6129115)
chr4 (173-229)||(19527319-19527375)
chr4 (181-229)||(42513145-42513193)
chr4 (180-220)||(55703006-55703046)
[»] chr6 (20 HSPs)
chr6 (155-258)||(15432706-15432819)
chr6 (156-231)||(11000903-11000978)
chr6 (155-227)||(2381102-2381174)
chr6 (155-229)||(32251044-32251117)
chr6 (155-229)||(17251349-17251423)
chr6 (155-229)||(11128905-11128979)
chr6 (155-229)||(33260774-33260848)
chr6 (164-229)||(1249613-1249678)
chr6 (155-228)||(11676708-11676779)
chr6 (155-229)||(24948317-24948391)
chr6 (155-229)||(30237052-30237126)
chr6 (155-228)||(17835968-17836041)
chr6 (164-229)||(24356156-24356221)
chr6 (164-206)||(364644-364686)
chr6 (163-229)||(7170226-7170292)
chr6 (164-206)||(12732272-12732314)
chr6 (164-229)||(373797-373862)
chr6 (164-225)||(3621668-3621729)
chr6 (164-229)||(9838224-9838289)
chr6 (155-216)||(22050135-22050196)
[»] chr2 (29 HSPs)
chr2 (156-227)||(25787413-25787484)
chr2 (155-229)||(9370048-9370122)
chr2 (155-228)||(8443766-8443839)
chr2 (156-229)||(32854876-32854949)
chr2 (156-229)||(43077366-43077439)
chr2 (157-227)||(3041639-3041707)
chr2 (173-226)||(7529818-7529871)
chr2 (30-81)||(4053752-4053803)
chr2 (162-229)||(13849817-13849884)
chr2 (30-81)||(16882072-16882123)
chr2 (30-81)||(17039762-17039813)
chr2 (155-229)||(3363658-3363732)
chr2 (155-229)||(10812273-10812347)
chr2 (155-229)||(11222411-11222485)
chr2 (155-229)||(15893675-15893749)
chr2 (155-229)||(30264697-30264771)
chr2 (155-229)||(34399276-34399350)
chr2 (164-229)||(13754029-13754094)
chr2 (155-229)||(928128-928200)
chr2 (155-229)||(10263830-10263905)
chr2 (164-219)||(13001015-13001070)
chr2 (155-229)||(479068-479142)
chr2 (155-229)||(2012935-2013009)
chr2 (155-229)||(4883677-4883751)
chr2 (155-229)||(14295852-14295926)
chr2 (155-229)||(15183096-15183170)
chr2 (174-228)||(25187241-25187295)
chr2 (155-229)||(26342654-26342728)
chr2 (155-216)||(44360520-44360581)
[»] chr5 (27 HSPs)
chr5 (157-231)||(40927207-40927281)
chr5 (157-229)||(12723050-12723122)
chr5 (157-229)||(12784533-12784605)
chr5 (155-227)||(8849226-8849300)
chr5 (155-229)||(7466238-7466312)
chr5 (155-229)||(39893898-39893972)
chr5 (156-229)||(7735173-7735246)
chr5 (156-229)||(32389042-32389115)
chr5 (162-229)||(37809815-37809882)
chr5 (162-229)||(37306795-37306862)
chr5 (162-229)||(37633732-37633799)
chr5 (155-229)||(16124349-16124423)
chr5 (155-229)||(34261368-34261442)
chr5 (155-229)||(36239514-36239588)
chr5 (155-228)||(3892869-3892942)
chr5 (164-228)||(38502898-38502962)
chr5 (174-229)||(18020876-18020931)
chr5 (162-229)||(31803380-31803447)
chr5 (155-229)||(2133995-2134069)
chr5 (155-229)||(8825113-8825187)
chr5 (155-229)||(25344016-25344090)
chr5 (155-229)||(28463474-28463548)
chr5 (155-229)||(38297891-38297965)
chr5 (164-229)||(1088031-1088096)
chr5 (180-229)||(13703153-13703202)
chr5 (164-229)||(37303205-37303270)
chr5 (181-229)||(28024374-28024422)
[»] scaffold0135 (1 HSPs)
scaffold0135 (162-229)||(30792-30859)
[»] scaffold1213 (1 HSPs)
scaffold1213 (174-229)||(79-134)
[»] scaffold0002 (1 HSPs)
scaffold0002 (164-229)||(138832-138897)
[»] scaffold0325 (1 HSPs)
scaffold0325 (157-229)||(389-461)
[»] scaffold0024 (1 HSPs)
scaffold0024 (173-229)||(49221-49277)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 10013525 - 10013265
Alignment:
Q  30 taattatccactatcaagttgtaatgttacgtataatattctagaaaattattccaatgggtgacttgatccttttactttttgaatcacatcatgaaca 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10013525 taattatccactatcaagttgtaatgttacgtataatattctagaaaattattccaatgggtgacttgatccttttacttttcgaatcacatcatgaaca 10013426  T
Q  130 tatcacatt---------gctttctcttatatttaccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatat 220  Q
    |||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10013425 tatcacatttatcacattgctttctcttatatttaccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatat 10013326  T
Q  221 aggtaaaaccatacattggactttgaaaacgacagttataaagtaacggagggagtattat 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10013325 aggtaaaaccatacattggactttgaaaacgacagttataaagtaacggagggagtattat 10013265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 27193145 - 27193218
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27193145 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataaaggtaatataggtaaaa 27193218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 11727729 - 11727659
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11727729 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataagtaaa 11727659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 29126050 - 29125974
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaacca 231  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  29126050 accttaatcatttaatacttcatttcatatatttctctctctgcaataaatatataagcgtaatataggtaaaacca 29125974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 17718650 - 17718577
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||| ||||| |||| ||||||||||| |||||||||||| ||||||||    
T  17718650 ccttattaatttaatatttcatttcatatgtttctttctccgcaataaatatctaagggtaatattggtaaaac 17718577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 26740230 - 26740303
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||| ||||| |||| ||||||||||| |||||||||||| ||||||||    
T  26740230 ccttattaatttaatatttcatttcatatgtttctttctccgcaataaatatctaagggtaatattggtaaaac 26740303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 44841625 - 44841676
Alignment:
Q  30 taattatccactatcaagttgtaatgttacgtataatattctagaaaattat 81  Q
    |||||||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  44841625 taattatccaatatcaagttgtaatgttatgtataatattctacaaaattat 44841676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 31028802 - 31028728
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||  |||||| ||||| |||||||||| |||||||| || |||||||||||| ||||||||    
T  31028802 accttattaatttaatgtttcatttcatatgtttctctctccgcaataaacatctaagggtaatattggtaaaac 31028728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 3720827 - 3720754
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||| |||||||||| ||||||||||| | || ||||||| ||||||||    
T  3720827 ccttattaatttaatatttcatttcatatgtttctctctctgcaataaatatcttagagtaatattggtaaaac 3720754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 27911765 - 27911838
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| ||||||  |||| |||||||||| ||||||||||| |||||| ||||| ||||||||    
T  27911765 ccttattaatttaatatttcattttatatgtttctctctccgcaataaatatctaagggcaatattggtaaaac 27911838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 27958184 - 27958257
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| ||||||  |||| |||||||||| ||||||||||| |||||| ||||| ||||||||    
T  27958184 ccttattaatttaatatttcattttatatgtttctctctccgcaataaatatctaagggcaatattggtaaaac 27958257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 43553178 - 43553113
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||| |||||| |||||||||||||||| ||||||||||  |||||||||||| | ||||||    
T  43553178 atttaatatttcatttcatatatttctctctccgcaataaataactaagggtaatattgataaaac 43553113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 14228414 - 14228487
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | |||||||| |||||| |||||||||||||||| |||||||||| | |||| |||||| ||||||||    
T  14228414 accttattcatttaatatttcatttcatatatttctctctccgcaataaata-acaaggataatattggtaaaac 14228487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 14263692 - 14263618
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  14263692 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 14263618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 14511522 - 14511596
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| ||||||  ||||  ||||||||| ||||||||||| ||||||||||||  |||||||    
T  14511522 accttattaatttaatatttcattttatatgcttctctctccgcaataaatatctaagggtaatattagtaaaac 14511596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 23430057 - 23429983
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  23430057 accttattcatttaatatctcatttcatatatttctctctctgcaataaataactaaggataatattggtaaaac 23429983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 33935152 - 33935226
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  33935152 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 33935226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 35052201 - 35052127
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| ||||||||||||||||  ||||||||| |||||| |||||| ||||||||    
T  35052201 accttatttatttaatatctcatttcatatatttctctctccacaataaataaataaggataatattggtaaaac 35052127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 38482884 - 38482958
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  38482884 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 38482958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 40521341 - 40521410
Alignment:
Q  162 taatttaatacttcattccatatat--ttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||||| |||||||  ||||||||| ||||||||||| ||| |||||||| ||||||||    
T  40521341 taatttaatatttcatttcatatatgtttctctctccgcaataaatatttaaaggtaatattggtaaaac 40521410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 12763573 - 12763508
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  |||||||||||| | ||||||    
T  12763573 atttaatatctcatttcatatatttctctctccgcaataaataactaagggtaatattgataaaac 12763508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 4057434 - 4057362
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| ||||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  4057434 cttattaatttaatatctcatttcatatatttctctctccgcaataaataattaaggacaatattggtaaaac 4057362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 36058371 - 36058315
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatat 220  Q
    ||||||||  ||||| |||||||||||||||||||||||||||  ||||| ||||||    
T  36058371 atttaatatctcatttcatatatttctctctcagcaataaataactaaggataatat 36058315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 42352886 - 42352819
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatatag 222  Q
    |||||| | ||||||||| ||||| ||||||||| ||  || ||||||||||| ||||||||||||||    
T  42352886 accttattcatttaatacctcatttcatatatttatcattctgcaataaatatctaagggtaatatag 42352819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 9954797 - 9954723
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  9954797 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 9954723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 12342706 - 12342780
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||| | |||||| ||||||||    
T  12342706 accttattcatttaatatctcatttcatatatttctctctccgcaataaatagttaaagataatattggtaaaac 12342780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 18291611 - 18291538
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | |||||||| |||||| |||||||||||||||| | ||||||||  ||||| |||||| ||||||||    
T  18291611 accttattcatttaatatttcatttcatatatttctctctccgtaataaataactaaggataatat-ggtaaaac 18291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 21651838 - 21651912
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| ||||||||||||| || ||||||||||  ||||| |||||| ||||||||    
T  21651838 accttattcatttaatatctcatttcatatatttctctttccgcaataaataactaaggataatattggtaaaac 21651912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 26062855 - 26062781
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  26062855 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 26062781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 34046999 - 34046925
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  34046999 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 34046925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 2335556 - 2335507
Alignment:
Q  180 catatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||||||||| ||||||||||  |||||||||| | ||||||||    
T  2335556 catatatttctctctccgcaataaataactaagggtaatgttggtaaaac 2335507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 11707602 - 11707651
Alignment:
Q  180 catatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||||||||| ||||||||||  |||||||||||| | ||||||    
T  11707602 catatatttctctctccgcaataaataattaagggtaatattgataaaac 11707651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 15623728 - 15623777
Alignment:
Q  180 catatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||||||||| ||||||||||  |||||||||||| | ||||||    
T  15623728 catatatttctctctccgcaataaataattaagggtaatattgataaaac 15623777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 15647516 - 15647565
Alignment:
Q  180 catatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||||||||| ||||||||||  |||||||||||| | ||||||    
T  15647516 catatatttctctctccgcaataaataattaagggtaatattgataaaac 15647565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 16701010 - 16701059
Alignment:
Q  180 catatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  16701010 catatatttctctctccgcaataaataactaaggataatattggtaaaac 16701059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 35296191 - 35296118
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||| ||||||||  | ||| |||||||||||||||| ||||||||||  ||| |||||| | ||||||||    
T  35296191 ccttaatcatttaatatcttatttcatatatttctctctccgcaataaataactaaaggtaatgtcggtaaaac 35296118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 26748501 - 26748388
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaacc----------atacattggacttt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  26748501 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaaccacatttaatgatacattggacttt 26748402  T
Q  245 gaaaacgacagtta 258  Q
    ||||||||||||||    
T  26748401 gaaaacgacagtta 26748388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 34750803 - 34750735
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatatagg 223  Q
    |||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  34750803 accttaattatttaatgcttcatttcatatatttctctctctgcaataaatatataagggtaatatagg 34750735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 3643294 - 3643368
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| ||||| |||||||||| ||||||||||| |||||||||||| | ||||||    
T  3643294 accttattaatttaatatttcatttcatatgtttctctctccgcaataaatatctaagggtaatattgataaaac 3643368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 33874645 - 33874718
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||  |||||||||| ||||||||||| |||||||||||| ||||||||    
T  33874645 ccttattaatttaatatttcatttcatacgtttctctctccgcaataaatatctaagggtaatattggtaaaac 33874718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 51065029 - 51064961
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggta 225  Q
    |||| |||||||||| |||||| ||||| |||||||||| ||||||||||| ||||| |||||| ||||    
T  51065029 cttattaatttaatatttcatttcatatgtttctctctccgcaataaatatctaaggataatattggta 51064961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 5244033 - 5244107
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  | |||||||||||||||||||| ||||||||||  |||||||||| | ||||||||    
T  5244033 accttagtcatttaatatcttattccatatatttctctctctgcaataaataactaagggtaatgttggtaaaac 5244107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 27992388 - 27992314
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | |||||||| |||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  27992388 accttattcatttaatatttcatttcatatatttctctctcggcaataaataactaaggacaatattggtaaaac 27992314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 28885826 - 28885752
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  28885826 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 28885752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 43775488 - 43775562
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  43775488 accttattcatttaatatctcatttcatatatttctctctccgcaataaatagctaaggataatattggtaaaac 43775562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 45101456 - 45101530
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  45101456 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 45101530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 54898184 - 54898258
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  54898184 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 54898258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 51244763 - 51244698
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  51244763 atttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 51244698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 51219200 - 51219256
Alignment:
Q  173 ttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  51219200 ttcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 51219256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 32853458 - 32853530
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| ||| |  ||||||||| ||||||||||| ||| |||||||| ||||||||    
T  32853458 accttattaatttaatatttcatttcatgt--ttctctctctgcaataaatatttaaaggtaatattggtaaaac 32853530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 32854046 - 32854109
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaat 218  Q
    |||||| | |||||||| || ||| |||||||||||||||| ||||||||||  ||||||||||    
T  32854046 accttagtcatttaatattttatttcatatatttctctctccgcaataaataactaagggtaat 32854109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 40010762 - 40010836
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  | ||| |||||||||||||||| ||||||||||  |||||||||| | ||||||||    
T  40010762 accttagtcatttaatatcttatttcatatatttctctctccgcaataaataactaagggtaatgtcggtaaaac 40010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 41168909 - 41168835
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||| | |||||| ||||||||    
T  41168909 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaagataatattggtaaaac 41168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 52173895 - 52173821
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| || ||||||| |||||| ||||| ||| |||||| |||||||||||  || |||||||| ||||||||    
T  52173895 accttattagtttaatatttcatttcatatgtttttctctctgcaataaatattcaaaggtaatattggtaaaac 52173821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 52663590 - 52663516
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  52663590 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 52663516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 54106411 - 54106337
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||  ||||||||||  ||||| |||||| ||||||||    
T  54106411 accttattcatttaatatctcatttcatatatttctctctatgcaataaataactaaggataatattggtaaaac 54106337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 13168156 - 13168091
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| | ||||||||  ||||| |||||| ||||||||    
T  13168156 atttaatatctcatttcatatatttctctctctgtaataaataactaaggataatattggtaaaac 13168091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 30861665 - 30861714
Alignment:
Q  180 catatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||||||||| ||||||||||  |||||||||| | ||||||||    
T  30861665 catatatttctctctccgcaataaatagctaagggtaatgttggtaaaac 30861714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 40139932 - 40139997
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatat 220  Q
    |||||| | ||||||||  | ||| |||||||||||||||| ||||||||||  ||||||||||||    
T  40139932 accttattcatttaatatcttatttcatatatttctctctccgcaataaataattaagggtaatat 40139997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 46973571 - 46973498
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    |||||| | ||||||||  ||||| ||||||||||| |||| ||||||||||  ||||| |||||| |||||||    
T  46973571 accttattcatttaatatatcatttcatatatttctttctccgcaataaataactaaggataatattggtaaaa 46973498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 47069964 - 47070029
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  47069964 atttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 47070029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 29651807 - 29651751
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatat 220  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| ||||||    
T  29651807 atttaatatctcatttcatatatttctctctccgcaataaataactaaggataatat 29651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 43159859 - 43159923
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatat 220  Q
    ||||| |||||||||| || |||  |||| ||| |||||| ||||||||||| ||||||||||||    
T  43159859 ccttattaatttaatattttattttatatgtttttctctctgcaataaatatttaagggtaatat 43159923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 48152107 - 48152059
Alignment:
Q  181 atatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||||| ||| |||||||||  |||||||||||| ||||||||    
T  48152107 atatatttctctttcaacaataaataactaagggtaatattggtaaaac 48152059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 48214189 - 48214141
Alignment:
Q  181 atatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||||||||  |||||||||  |||||||||||| ||||||||    
T  48214189 atatatttctctctccacaataaataactaagggtaatattggtaaaac 48214141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 38569694 - 38569785
Alignment:
Q  140 ctttctcttatatttaccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaacca 231  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  38569694 ctttttcttataataaccttaataatttaatacttcattccatatatttctctctcggcaataaatatataagggtaatagaggtaaaacca 38569785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 45230127 - 45230066
Alignment:
Q  161 ataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatatag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45230127 ataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatatag 45230066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 2572119 - 2572047
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    |||||||| |||||||| |||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  2572119 accttaattatttaatatttcatttcatatatttcactctctgcaataaatatataaaggtaatataggtaaa 2572047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 8973549 - 8973613
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    ||||||||||||||| |||||||||||||| |  |||||||||||||||||||||||||||||||    
T  8973549 atttaatacttcatttcatatatttctctccctacaataaatatataagggtaatataggtaaaa 8973613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 10630559 - 10630482
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaaccata 233  Q
    |||||||| ||||||||||||||| ||||||||| | |||  ||||||||||||||||||||||||||||||| |||||    
T  10630559 accttaattatttaatacttcatttcatatatttttatctt-gcaataaatatataagggtaatataggtaaagccata 10630482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 37735229 - 37735302
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||| | ||||||||    
T  37735229 ccttattaatttaatatttcatttcatatgtttctctctccgcaataaatatataagggtaatgttggtaaaac 37735302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 4101000 - 4101072
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| |||||||||| |||||| ||||| ||| |||||| |||||||||||||||||||||||| ||||||||    
T  4101000 cttattaatttaatatttcatttcatatgtttttctctccgcaataaatatataagggtaatattggtaaaac 4101072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 41155423 - 41155350
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    |||||||| ||||||||||||||| ||||| |||||  |||  |||||||||||||| ||||||||||||||||    
T  41155423 accttaattatttaatacttcatttcatatttttcttcctctccaataaatatataaaggtaatataggtaaaa 41155350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 32168408 - 32168475
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||||| ||||| |||||||||| ||||||||||| |||||||||||| | ||||||    
T  32168408 taatttaatatttcatttcatatgtttctctctccgcaataaatatctaagggtaatattgataaaac 32168475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 1677353 - 1677272
Alignment:
Q  148 tatatttaccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  1677353 tatattgaccttattcatttaatatctcatttcatatatttctctctccgcaataaataattaaggataatattggtaaaac 1677272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 42800246 - 42800181
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||||| ||||| ||||||||||  |||||||||||||||| |||||| ||||||||    
T  42800246 taatttaatatttcatttcatatgtttctctctc--caataaatatataaggataatattggtaaaac 42800181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 43809029 - 43808974
Alignment:
Q  173 ttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||||||| |||||||    
T  43809029 ttcatttcatatgtttctctctctgcaataaatatctaagggtaatattggtaaaa 43808974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 12721588 - 12721514
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| || ||| ||||| |||||||||| ||||||||||| |||||| ||| | ||||||||    
T  12721588 accttattaatttaatattttatttcatatgtttctctctctgcaataaatatctaagggaaatcttggtaaaac 12721514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 24781823 - 24781897
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | |||||||| |||||| |||||||||||||||| ||||||||||  ||||| |||||| | ||||||    
T  24781823 accttattcatttaatatttcatttcatatatttctctctccgcaataaataactaaggataatattgataaaac 24781897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 37609390 - 37609464
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  37609390 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 37609464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 43500654 - 43500580
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  43500654 accttattcatttaatatctcatttcatatatttctctctctgcaataaataactaaggataatattggtaaaac 43500580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 45368236 - 45368162
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  45368236 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 45368162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 48174768 - 48174826
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatat 220  Q
    |||||||| | |||||| ||||| |||||||||| ||||||||||| ||||||||||||    
T  48174768 taatttaacatttcatttcatatgtttctctctccgcaataaatatttaagggtaatat 48174826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 21927785 - 21927858
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    |||||| | |||||||| ||||||  ||||||||||||||| ||||||||||  ||||| |||||| |||||||    
T  21927785 accttattcatttaatatttcattttatatatttctctctccgcaataaataactaaggataatattggtaaaa 21927858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 33720662 - 33720591
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| |||||||||| |||||| ||| | |||||||||| ||||||| ||| |||||||||||| ||||||||    
T  33720662 cttattaatttaatatttcatttcatgtttttctctctccgcaataa-tatttaagggtaatattggtaaaac 33720591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 1859241 - 1859169
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||| || |||||  ||||| |||||| ||||||||    |||||||||||||||||||||||||||||||    
T  1859241 accttaatcatctaatatctcatttcatatacttctctctat--aataaatatataagggtaatataggtaaaac 1859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 13507911 - 13507844
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||||  ||||| ||||||||||||||||  |||||||||  ||||| |||||| ||||||||    
T  13507911 taatttaatatctcatttcatatatttctctctccacaataaataactaaggataatattggtaaaac 13507844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 13515099 - 13515032
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||||  ||||| ||||||||||||||||  |||||||||  ||||| |||||| ||||||||    
T  13515099 taatttaatatctcatttcatatatttctctctccacaataaataactaaggataatattggtaaaac 13515032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 32994577 - 32994632
Alignment:
Q  174 tcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  32994577 tcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 32994632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 49908290 - 49908345
Alignment:
Q  174 tcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  49908290 tcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 49908345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 51613552 - 51613485
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||||| ||||| ||||||| || ||||||||||| |||| ||||||| | ||||||    
T  51613552 taatttaatatttcatttcatatgtttctctatccgcaataaatatctaagagtaatattgataaaac 51613485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 18033915 - 18033989
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| | ||||||    
T  18033915 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattgataaaac 18033989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 30686559 - 30686485
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  30686559 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 30686485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 44818602 - 44818528
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||  ||||||||||  ||||| |||||| ||||||||    
T  44818602 accttattcatttaatatctcatttcatatatttctctctatgcaataaataactaaggataatattggtaaaac 44818528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 15660726 - 15660661
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||| || ||| |||||||||||||||| | ||||||||  |||||||||| | ||||||||    
T  15660726 atttaatattttatttcatatatttctctctccgtaataaataactaagggtaatgttggtaaaac 15660661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 19455513 - 19455562
Alignment:
Q  180 catatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| ||||||||||| ||||||||||  |||||||||||| ||||||||    
T  19455513 catagatttctctctccgcaataaataattaagggtaatattggtaaaac 19455562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 35700473 - 35700538
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| ||||||||||| |||| ||||||||||  |||||||||||| | ||||||    
T  35700473 atttaatatctcatttcatatatttctttctccgcaataaataactaagggtaatattgataaaac 35700538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 5598203 - 5598143
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggt 215  Q
    |||||| | |||||||| || ||| |||||||||||||||| ||||||||||  |||||||    
T  5598203 accttattcatttaatattttatttcatatatttctctctccgcaataaataactaagggt 5598143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 46715397 - 46715510
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaacc----------atacattggacttt 244  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||          ||||||||||||||    
T  46715397 accttaataatttaatattttattccatatatttctctctcagcaataaatatataagggtaatatagataaaaccacatttaatgatacattggacttt 46715496  T
Q  245 gaaaacgacagtta 258  Q
    ||||||||||||||    
T  46715497 gaaaacgacagtta 46715510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 22786028 - 22785956
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  22786028 accttaataatttaatacttcattcaatatatttctctctcagcaaaaaatatataagggtaatatatgtaaa 22785956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 32049559 - 32049489
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    |||||| ||||||||||||||| ||| ||||| |||||| |||||||||||||||| ||||||||||||||    
T  32049559 cttaatcatttaatacttcatttcatgtatttatctctctgcaataaatatataagagtaatataggtaaa 32049489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 18194310 - 18194383
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||| | ||||||||    
T  18194310 ccttattaatttaatatttcatttcatatgtttctctctccgcaataaatatataagggtaatgttggtaaaac 18194383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 31815165 - 31815237
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| |||||||||| |||||| ||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  31815165 cttattaatttaatatttcatttcatatgtttctctctccgcaataaatatctaagggtaatattggtaaaac 31815237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 30586771 - 30586843
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    |||||||| ||||||||  ||||| |||||||||||||||| ||| ||||||| |||||||||||||| ||||    
T  30586771 accttaatcatttaatatctcatttcatatatttctctctctgcagtaaatatctaagggtaatatagataaa 30586843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 42841968 - 42842026
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatat 220  Q
    |||||||||| |||||| ||||| |||||||||| ||||||||||| ||||||||||||    
T  42841968 taatttaatatttcatttcatatgtttctctctccgcaataaatatctaagggtaatat 42842026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 35746741 - 35746813
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||| ||||||| || ||||||||||| |||||||||||| ||||||||    
T  35746741 ccttattaatttaatatttcatttcatatgtttctctttc-gcaataaatatctaagggtaatattggtaaaac 35746813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 18470455 - 18470381
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  18470455 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 18470381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 20035187 - 20035122
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  20035187 atttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 20035122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 20045598 - 20045533
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  20045598 atttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 20045533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 26632275 - 26632348
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| |||||||    
T  26632275 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaa 26632348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 46285941 - 46286014
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| || ||| |||||||||||||||  ||||||||||  |||||||||| | ||||||||    
T  46285941 ccttagtaatttaatattttatttcatatatttctctctacgcaataaataactaagggtaatgttggtaaaac 46286014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 9142359 - 9142428
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    ||||||| |||||||||||||||  |||||||||| | |  |||||||||||||||||||| ||||| ||||    
T  9142359 ccttaatcatttaatacttcattttatatatttctatgt--gcaataaatatataagggtagtatagataaa 9142428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 17354111 - 17354195
Alignment:
Q  145 tcttatatttaccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||| | |||||| |||||||||| |||||| ||||| ||||||| |  |||||| |||| ||||||||||||  |||||||    
T  17354111 tcttataatgaccttattaatttaatatttcatttcatatgtttctcttttcgcaatatatatctaagggtaatattcgtaaaac 17354195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 33173936 - 33173881
Alignment:
Q  174 tcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  33173936 tcatttcatatatttctctctctgcaataaataactaaggataatattggtaaaac 33173881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 37353965 - 37354067
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaaccatacattggactttgaaaacgaca 254  Q
    |||||| | |||||| | |||||| ||||||||||||||||  |||||||||  ||||| |||||| ||||||| ||  ||||| |||||||||  ||||    
T  37353965 accttattcatttaacatttcatttcatatatttctctctccacaataaataactaaggataatattggtaaaa-caagcattgaactttgaaagtgaca 37354063  T
Q  255 gtta 258  Q
    ||||    
T  37354064 gtta 37354067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 7312765 - 7312691
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  7312765 accttatttatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 7312691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 7477293 - 7477367
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| ||||||||||  ||||| |||||||||||||||  | ||||||||  ||||| |||||| ||||||||    
T  7477293 accttattaatttaatatctcatttcatatatttctctcttcgtaataaataactaaggataatatcggtaaaac 7477367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 12838173 - 12838247
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| || |||||    
T  12838173 accttatttatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggcaaaac 12838247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 17896618 - 17896692
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  17896618 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 17896692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 31430707 - 31430633
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  31430707 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 31430633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 34368754 - 34368828
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| ||||| ||| |||||  |||||||||||  || |||||||| ||||||||    
T  34368754 accttattaatttaatatttcatttcatatgtttttctcttcgcaataaatattcaaaggtaatattggtaaaac 34368828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 36922387 - 36922313
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| ||||||||||| |||| ||||||||||  ||||| |||||| ||||||||    
T  36922387 accttattcatttaatatctcatttcatatatttctttctccgcaataaataactaaggataatattggtaaaac 36922313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 32528432 - 32528497
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| ||||||||||||||||  |||||||||  ||||| |||||| ||||||||    
T  32528432 atttaatatctcatttcatatatttctctctccacaataaataactaaggataatattggtaaaac 32528497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 22382176 - 22382241
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||| | ||||| |||||||||  ||||||||||| ||||| |||||| ||||||||    
T  22382176 taatttaatatttcaattcatatgtttctctct--gcaataaatatctaaggataatattggtaaaac 22382241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 51654965 - 51655037
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51654965 accttaataatttaatagttcattccatatatttctctctcagcaataaatatataagggtaatatagataaa 51655037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 39309082 - 39309008
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  39309082 accttaataatttaatacttcatttcatatatttctctctctgcaataaatatataaggataatataggtaaaac 39309008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 48509964 - 48510034
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    |||||| ||||||||||||||| |||||||||||||||  |||||||||||||||| ||||||||||||||    
T  48509964 cttaatcatttaatacttcatttcatatatttctctctatgcaataaatatataagagtaatataggtaaa 48510034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 33809237 - 33809164
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| |||||||||||||||| ||||||||||| || ||||||||| ||||||||    
T  33809237 ccttattaatttaatatttcatttcatatatttctctctccgcaataaatatctaggggtaatattggtaaaac 33809164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 9220141 - 9220208
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||| | ||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  9220141 taatttaatatttcaattcatatgtttctctctctgcaataaatatctaagggtaatattggtaaaac 9220208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 3436160 - 3436234
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| |||||||||||||||| | ||||||||  ||||| |||||| ||||||||    
T  3436160 accttattaatttaatatttcatttcatatatttctctctccgtaataaataactaaggataatattggtaaaac 3436234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 30939306 - 30939232
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| ||||  |||||||||| |||||||||||  ||||||||||| ||||||||    
T  30939306 accttattaatttaatatttcatttcatacgtttctctctccgcaataaatatccaagggtaatattggtaaaac 30939232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 34361186 - 34361130
Alignment:
Q  173 ttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  34361186 ttcatttcatatgtttctctctccgcaataaatatctaagggtaatatcggtaaaac 34361130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 38866054 - 38865982
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    |||||||| ||||||||  ||||| ||||||||||||||||  ||| ||||||  ||||||||||||||||||    
T  38866054 accttaatcatttaatatctcattacatatatttctctctctacaacaaatatccaagggtaatataggtaaa 38865982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 43888126 - 43888059
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||||| ||||| ||||||| || ||||||||||| |||||||||||| | ||||||    
T  43888126 taatttaatatttcatttcatatgtttctctatccgcaataaatatctaagggtaatattgataaaac 43888059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 29295505 - 29295431
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  29295505 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 29295431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 35232391 - 35232465
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  35232391 accttattcatttaatatctcatttcatatatttctctctccgcaataaataagtaaggataatattggtaaaac 35232465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 46872072 - 46871998
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | |||||||| |||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  46872072 accttattcatttaatatttcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 46871998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 52677238 - 52677312
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  52677238 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 52677312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 5374452 - 5374517
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  5374452 atttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 5374517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 18781638 - 18781557
Alignment:
Q  147 ttatatttaccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    ||||| |||||||| | | |||||| |||||| |||||||||||||||| ||||||||||  ||| | |||||| |||||||    
T  18781638 ttataattaccttattcaattaatatttcatttcatatatttctctctccgcaataaataactaaagataatattggtaaaa 18781557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 19399683 - 19399610
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| ||||||||||  | ||| |||||||||||||||| ||||||||||  |||||||||| | ||||||||    
T  19399683 ccttagtaatttaatatcttatttcatatatttctctctccgcaataaataactaagggtaatgttggtaaaac 19399610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 41955775 - 41955832
Alignment:
Q  163 aatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatat 220  Q
    ||||||||| |||||| ||||| |||||||||| ||||||||||| ||||| ||||||    
T  41955775 aatttaatatttcatttcatatttttctctctctgcaataaatatctaaggataatat 41955832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 44217848 - 44217783
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  44217848 atttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 44217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 19731465 - 19731525
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggt 215  Q
    |||||| |||||||||| |||||| || || |||||||||| ||||||||||| |||||||    
T  19731465 accttattaatttaatatttcatttcaaatgtttctctctccgcaataaatatctaagggt 19731525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 26933874 - 26933938
Alignment:
Q  165 tttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||| |||||| |||||||||||||||| || |||||||  |||||||||||| | ||||||    
T  26933874 tttaatatttcatttcatatatttctctctctgcgataaataactaagggtaatattgataaaac 26933938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 55430396 - 55430472
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaacca 231  Q
    |||| ||| ||||||||||| ||| ||||||||| |||||   |||||| ||| ||||| |||||||||||||||||    
T  55430396 acctcaatcatttaatacttaatttcatatatttatctcttcacaataagtatctaaggataatataggtaaaacca 55430472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 23623607 - 23623662
Alignment:
Q  174 tcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  23623607 tcatttcatatatttctctctccgcaataaatacttaaggataatattggtaaaac 23623662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 26906482 - 26906533
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaata 206  Q
    |||||| ||||||||||  ||||| |||||||||||||||| ||||||||||    
T  26906482 accttattaatttaatatctcatttcatatatttctctctccgcaataaata 26906533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 31862098 - 31862153
Alignment:
Q  174 tcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| ||||||||||| |||| |||||||||| |||||| |||||| ||||||||    
T  31862098 tcatttcatatatttctttctccgcaataaataaataaggataatattggtaaaac 31862153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 55147173 - 55147228
Alignment:
Q  174 tcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  55147173 tcatttcatatatttctctctccgcaataaataagtaaggataatattggtaaaac 55147228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 13629286 - 13629360
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  13629286 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 13629360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 21044840 - 21044914
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||| | |||||| ||||||||    
T  21044840 accttatttatttaatatctcattgcatatatttctctctccgcaataaataactaaagataatattggtaaaac 21044914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 27492511 - 27492461
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaat 205  Q
    |||||| | |||||||| |||||| |||||||||||||||| |||||||||    
T  27492511 accttattcatttaatatttcatttcatatatttctctctccgcaataaat 27492461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 35381508 - 35381582
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| ||||||  |||||||    
T  35381508 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattagtaaaac 35381582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 40412094 - 40412020
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | |||||| | |||||| |||||||||||||||| ||||||||||  ||||| |||||| | ||||||    
T  40412094 accttattcatttaacatttcatttcatatatttctctctccgcaataaataattaaggataatattgataaaac 40412020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 51347393 - 51347339
Alignment:
Q  175 cattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| ||||| ||| |||||| ||||||||||| |||||||||||| ||||||||    
T  51347393 catttcatatgtttttctctccgcaataaatatctaagggtaatattggtaaaac 51347339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 53599899 - 53599953
Alignment:
Q  175 cattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  53599899 catttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 53599953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 35231832 - 35231767
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||| || ||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  35231832 atttaatattttatttcatatatttctctctccgcaataaataattaaggacaatattggtaaaac 35231767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 36750699 - 36750626
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||| ||||||||  | |||  ||||||||||||||| ||||||||||  |||||||||| | ||||||||    
T  36750699 ccttaatcatttaatatattattttatatatttctctctccgcaataaataattaagggtaatgttggtaaaac 36750626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 56499709 - 56499773
Alignment:
Q  159 taataatttaatacttcattccatatattt--ctctctcagcaataaatatataagggtaatata 221  Q
    |||| ||||||||  ||||| |||||||||  ||||||| |||||||||| ||||||||||||||    
T  56499709 taatcatttaatatctcatttcatatatttttctctctctgcaataaataaataagggtaatata 56499773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 1146140 - 1146216
Alignment:
Q  153 ttaccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||| || ||||||||  ||||| ||||||||||||||||  |||||||||   |||||||||| ||| |||||    
T  1146140 ttaccttcatcatttaatatctcatttcatatatttctctctctacaataaataatcaagggtaataaaggcaaaac 1146216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 6129115 - 6129056
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggta 216  Q
    ||||||| ||||| || |||||||||| ||||||||||||  ||||||||| |||||||||    
T  6129115 ccttaatcatttattatttcattccat-tatttctctctctacaataaatagataagggta 6129056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 19527319 - 19527375
Alignment:
Q  173 ttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| ||||||||||||||||  |||||||||  ||||| |||||| ||||||||    
T  19527319 ttcatttcatatatttctctctccacaataaataactaaggataatattggtaaaac 19527375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 42513145 - 42513193
Alignment:
Q  181 atatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  42513145 atatatttctctctccgcaataaataactaaggataatattggtaaaac 42513193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 55703046 - 55703006
Alignment:
Q  180 catatatttctctctcagcaataaatatataagggtaatat 220  Q
    |||||||||||||||| ||||||||||  ||||||||||||    
T  55703046 catatatttctctctctgcaataaataattaagggtaatat 55703006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 15432819 - 15432706
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaacc----------atacattggacttt 244  Q
    ||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||          ||||||||||||||    
T  15432819 accttaataatttaatatttcatttcatatatttatctctcagtaataaatatataagggtaatataggtaaaaccacatttaatgatacattggacttt 15432720  T
Q  245 gaaaacgacagtta 258  Q
    ||||||||||||||    
T  15432719 gaaaacgacagtta 15432706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 11000903 - 11000978
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaacca 231  Q
    ||||||| ||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  11000903 ccttaatcatttaatacttcatttcatatatttctctctatgcaataaatatataagggtaatataggtaaaacca 11000978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 2381102 - 2381174
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    |||||||| ||||||| ||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  2381102 accttaattatttaatgcttcatttcatatatttctctctttgcaataaatatataagggtaatataggtaaa 2381174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 32251044 - 32251117
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||| ||||||||| ||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  32251044 accttaatcatttaatacctcatttcatatatttctctctctgcaat-aatatctaagggtaatataggtaaaac 32251117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 17251349 - 17251423
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| ||||| |||||||||  ||||||||||| |||||||||||| ||||||||    
T  17251349 accttattaatttaatatttcatttcatatgtttctctctttgcaataaatatctaagggtaatattggtaaaac 17251423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 11128979 - 11128905
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||| | ||||| | |||||||| ||||||||||| |||||||||||| ||||||||    
T  11128979 accttattaatttaatatttcaattcatatgtatctctctccgcaataaatatctaagggtaatattggtaaaac 11128905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 33260848 - 33260774
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||  |||||| ||||| |||||||||| |||||||| || |||||||||||| ||||||||    
T  33260848 accttattaatttaatgtttcatttcatatgtttctctctccgcaataaacatctaagggtaatattggtaaaac 33260774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 1249678 - 1249613
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||| |||||| |||||||||||||||| ||||||||||  |||||||||||| | ||||||    
T  1249678 atttaatatttcatttcatatatttctctctccgcaataaataactaagggtaatattgataaaac 1249613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 11676708 - 11676779
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    |||||| |||||||||| |||||| ||||| |||||||||  ||||||||||| |||| ||||||| |||||||    
T  11676708 accttattaatttaatatttcatttcatatgtttctctct--gcaataaatatctaagagtaatattggtaaaa 11676779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 24948391 - 24948317
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| ||||  |||||||||| |||||||||||  |||||||||||  |||||||    
T  24948391 accttattaatttaatatttcatttcatacgtttctctctccgcaataaatatccaagggtaatattagtaaaac 24948317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 30237126 - 30237052
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| ||||||||||  |||||  |||||||||||| ||| |||||||||  |||||||||||| ||||||||    
T  30237126 accttattaatttaatatctcattttatatatttctctttcaacaataaataactaagggtaatattggtaaaac 30237052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 17836041 - 17835968
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| |||||||    
T  17836041 accttattcatttaatatatcatttcatatatttctctctccgcaataaataattaaggataatattggtaaaa 17835968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 24356156 - 24356221
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||| |||||| ||||| |||||||||| | ||||||||| |||||||||||| | ||||||    
T  24356156 atttaatatttcatttcatatgtttctctctccggaataaatatctaagggtaatattgataaaac 24356221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 364644 - 364686
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaata 206  Q
    |||||||| |||||| |||||||||||||||| ||||||||||    
T  364644 atttaatatttcatttcatatatttctctctccgcaataaata 364686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 7170292 - 7170226
Alignment:
Q  163 aatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||| ||||||  |||| |||||||||| ||||||||||| || ||||||||  ||||||||    
T  7170292 aatttaatatttcattttatatgtttctctctccgcaataaatatttaggggtaataatggtaaaac 7170226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 12732314 - 12732272
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaata 206  Q
    |||||||| |||||| |||||||||||||||| ||||||||||    
T  12732314 atttaatatttcatttcatatatttctctctccgcaataaata 12732272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 373862 - 373797
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| |||||||||| |||| |  ||||| ||||||||    
T  373862 atttaatatctcatttcatatatttctctctccgcaataaataaataatgacaatattggtaaaac 373797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 3621729 - 3621668
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggta 225  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||    
T  3621729 atttaatatctcatttcatatatttctctctctgcaataaataactaaggataatattggta 3621668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 9838224 - 9838289
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||| ||||| ||||||||||  |||||||||||| | ||||||    
T  9838224 atttaatatctcatttcatatatttccctctccgcaataaataactaagggtaatattgataaaac 9838289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 22050196 - 22050135
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggta 216  Q
    |||||| | ||||||||  | ||| |||||||||||||||| ||||||||||| ||||||||    
T  22050196 accttattcatttaatatcttatttcatatatttctctctccgcaataaatatttaagggta 22050135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 25787484 - 25787413
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    ||||||| ||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  25787484 ccttaatcatttaatacttcatttcatatatttctctctatgcaataaatatataagggtaatataggtaaa 25787413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 9370122 - 9370048
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| ||||| |||||||||| ||||||||||| |||||||||||| | ||||||    
T  9370122 accttattaatttaatatttcatttcatatgtttctctctccgcaataaatatttaagggtaatattgataaaac 9370048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 8443839 - 8443766
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    |||||| |||||||||| |||||| ||| | |||||||||| ||||||||||| |||||||||||| |||||||    
T  8443839 accttattaatttaatatttcatttcatttgtttctctctccgcaataaatatctaagggtaatattggtaaaa 8443766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 32854876 - 32854949
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||| |||||||||| |||||||| || |||||||||||| ||||||||    
T  32854876 ccttattaatttaatatttcatttcatatgtttctctctccgcaataaacatctaagggtaatattggtaaaac 32854949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 43077439 - 43077366
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| || ||| ||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  43077439 ccttattaatttaatattttatttcatatgtttctctctccgcaataaatatctaagggtaatattggtaaaac 43077366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 3041707 - 3041639
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    |||||| ||||||||||||||| ||| |||||||||||   |||||||||||| |||||||||||||||||    
T  3041707 cttaatcatttaatacttcatttcatgtatttctctcta--caataaatatattagggtaatataggtaaa 3041639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 7529818 - 7529871
Alignment:
Q  173 ttcattccatatatttctctctcagcaataaatatataagggtaatataggtaa 226  Q
    |||||| |||||||||||||||| ||||||||||  ||||||||||||||||||    
T  7529818 ttcatttcatatatttctctctctgcaataaataactaagggtaatataggtaa 7529871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 4053803 - 4053752
Alignment:
Q  30 taattatccactatcaagttgtaatgttacgtataatattctagaaaattat 81  Q
    |||||||| | |||||||||||||||||  ||||||||||||||||||||||    
T  4053803 taattatctagtatcaagttgtaatgttctgtataatattctagaaaattat 4053752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 13849817 - 13849884
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||||| ||||| |||||||||| ||||||||||| ||| |||||||| | ||||||    
T  13849817 taatttaatatttcatttcatatgtttctctctctgcaataaatatctaaaggtaatattgataaaac 13849884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 16882072 - 16882123
Alignment:
Q  30 taattatccactatcaagttgtaatgttacgtataatattctagaaaattat 81  Q
    |||||||||| ||||||||| |||||||| |||||| |||||||||||||||    
T  16882072 taattatccagtatcaagttataatgttatgtataaaattctagaaaattat 16882123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 17039762 - 17039813
Alignment:
Q  30 taattatccactatcaagttgtaatgttacgtataatattctagaaaattat 81  Q
    |||||||||| ||||||||| |||||||| |||||| |||||||||||||||    
T  17039762 taattatccagtatcaagttataatgttatgtataaaattctagaaaattat 17039813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 3363732 - 3363658
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  3363732 accttattgatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 3363658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 10812347 - 10812273
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  10812347 accttattcatttaatatctcatttcatatatttctctctccgcaataaataattaaggataatattggtaaaac 10812273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 11222411 - 11222485
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  11222411 accttattcatttaatatctcatttcatatatttctctctctgcaataaataactaaggataatattggtaaaac 11222485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 15893675 - 15893749
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  15893675 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 15893749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 30264697 - 30264771
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | |||||||| |||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  30264697 accttattcatttaatatttcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 30264771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 34399350 - 34399276
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  34399350 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 34399276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 13754094 - 13754029
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||| |||||  |||||||||||||||| ||||||||||  |||||||||||| | ||||||    
T  13754094 atttaatatttcatgtcatatatttctctctccgcaataaataactaagggtaatattgataaaac 13754029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 928128 - 928200
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||| |||||||||||||||  ||||||||||||||   |||||||||| ||||  ||||||| |||||||    
T  928128 accttaatcatttaatacttcatttaatatatttctctct--acaataaatatttaagaataatatatgtaaaac 928200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 10263905 - 10263830
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatata-taagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| |||||||||| | ||||| |||||| ||||||||    
T  10263905 accttattcatttaatatctcatttcatatatttctctctccgcaataaataaactaaggataatattggtaaaac 10263830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 13001015 - 13001070
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaata 219  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  |||||||||||    
T  13001015 atttaatatctcatttcatatatttctctctccgcaataaataactaagggtaata 13001070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 479068 - 479142
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| | ||||||    
T  479068 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattgataaaac 479142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 2013009 - 2012935
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| ||||||||||  | ||| ||||||||||||||||  |||||||||  |||||||||| | ||||||||    
T  2013009 accttagtaatttaatatcttatttcatatatttctctctccacaataaataactaagggtaatgttggtaaaac 2012935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 4883751 - 4883677
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||| | |||||| ||||||||    
T  4883751 accttattcatttaatatctcatttcatatatttctctctctgcaataaataactaaagataatattggtaaaac 4883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 14295852 - 14295926
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | |||||||| |||||| |||||||||||||||  ||||||||||  |||||  ||||| ||||||||    
T  14295852 accttattcatttaatatttcatttcatatatttctctcttcgcaataaataactaaggacaatattggtaaaac 14295926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 15183096 - 15183170
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  15183096 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 15183170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 25187241 - 25187295
Alignment:
Q  174 tcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    ||||| ||||| |||||||||| ||||||||||| |||| ||||||| |||||||    
T  25187241 tcatttcatatgtttctctctccgcaataaatatttaagagtaatattggtaaaa 25187295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 26342728 - 26342654
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  26342728 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 26342654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 44360581 - 44360520
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggta 216  Q
    |||||| | ||||||||  | ||| |||||||||||||||| ||||||||||| ||||||||    
T  44360581 accttattcatttaatatcttatttcatatatttctctctccgcaataaatatttaagggta 44360520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 40927281 - 40927207
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaacca 231  Q
    |||||| |||||||||||||||  ||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  40927281 cttaatcatttaatacttcattttatatattgctctctctgcaataaatatataagagtaatataggtaaaacca 40927207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 12723050 - 12723122
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| |||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  12723050 cttattaatttaatatttcatttcatatgtttctctctccgcaataaatatataagggtaatattggtaaaac 12723122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 12784533 - 12784605
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| |||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  12784533 cttattaatttaatatttcatttcatatgtttctctctccgcaataaatatataagggtaatattggtaaaac 12784605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 8849226 - 8849300
Alignment:
Q  155 accttaataatttaatacttc--attccatatatttctctctcagcaataaatatataagggtaatataggtaaa 227  Q
    |||||||| ||||||||||||  ||| |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  8849226 accttaatcatttaatacttctcatttcatacatttctctctctgcaataaatatataagggtaatataggtaaa 8849300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 7466312 - 7466238
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| ||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  7466312 accttattaatttaatatttcatttcatatgtttctctctccgcaataaatatctaagggtaatattggtaaaac 7466238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 39893898 - 39893972
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||||| |||||| ||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  39893898 accttattaatttaatatttcatttcatatgtttctctctccgcaataaatatttaagggtaatattggtaaaac 39893972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 7735173 - 7735246
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||| |||||||||| ||||||||||||||||| |||| | ||||||||    
T  7735173 ccttattaatttaatatttcatttcatatgtttctctctccgcaataaatatataaggataatgttggtaaaac 7735246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 32389115 - 32389042
Alignment:
Q  156 ccttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| |||||| ||||| ||||| |||| ||||||||||| |||||||||||| ||||||||    
T  32389115 ccttattaatttaatatttcatttcatatgtttctttctccgcaataaatatctaagggtaatattggtaaaac 32389042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 37809882 - 37809815
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| || | | ||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  37809882 taatttaatattttaattcatatgtttctctctctgcaataaatatataagggtaatattggtaaaac 37809815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 37306795 - 37306862
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||| | ||||| ||| |||||| ||||||||||| |||||||||||| ||||||||    
T  37306795 taatttaatatttcaattcatatgtttttctctctgcaataaatatctaagggtaatattggtaaaac 37306862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 37633799 - 37633732
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| || | | ||||| ||||||| || |||||||||||||||||||||||| ||||||||    
T  37633799 taatttaatattttaattcatatgtttctctttctgcaataaatatataagggtaatattggtaaaac 37633732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 16124349 - 16124423
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  16124349 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 16124423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 34261442 - 34261368
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  34261442 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 34261368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 36239588 - 36239514
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| ||||||||||  | ||| |||||||||||||||| ||||||||||  |||||||||||| | ||||||    
T  36239588 accttattaatttaatatcttatttcatatatttctctctccgcaataaataattaagggtaatattgataaaac 36239514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 3892942 - 3892869
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    |||||| |||||||||| || |||  |||| |||||||||| ||||||||||| |||||||||||  |||||||    
T  3892942 accttattaatttaatattttattatatatgtttctctctccgcaataaatatttaagggtaatactggtaaaa 3892869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 38502898 - 38502962
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaa 228  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| |||||||    
T  38502898 atttaatatctcatttcatatatttctctctccgcaataaatagttaaggataatattggtaaaa 38502962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 18020876 - 18020931
Alignment:
Q  174 tcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  18020876 tcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 18020931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 31803447 - 31803380
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||| | ||||| |||||||||| ||||||||||| ||||| ||||||  |||||||    
T  31803447 taatttaatatttcaattcatatgtttctctctccgcaataaatatctaaggataatattagtaaaac 31803380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 2133995 - 2134069
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||| |  ||||| |||||||||||||||| ||||||||||  ||||| |||||| || |||||    
T  2133995 accttattaatttaacatctcatttcatatatttctctctccgcaataaataactaaggataatattggcaaaac 2134069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 8825187 - 8825113
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  8825187 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 8825113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 25344090 - 25344016
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  25344090 accttattcatttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 25344016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 28463474 - 28463548
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| | ||||||||  | ||| |||||||||||||||| ||||||||||  |||||||||| | ||||||||    
T  28463474 accttagtcatttaatatcttatttcatatatttctctctccgcaataaataactaagggtaatgttggtaaaac 28463548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 38297891 - 38297965
Alignment:
Q  155 accttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| |||||||| |  ||||| |||||||||||||||| ||||||||||   |||| |||||| ||||||||    
T  38297891 accttattaatttaacatatcatttcatatatttctctctccgcaataaataacaaaggataatattggtaaaac 38297965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 1088031 - 1088096
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  |||||  ||||| ||||||||    
T  1088031 atttaatatctcatttcatatatttctctctccgcaataaataactaaggacaatattggtaaaac 1088096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 13703202 - 13703153
Alignment:
Q  180 catatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||| ||||||||||| ||| |||||||| ||||||||    
T  13703202 catatgtttctctctccgcaataaatatctaaaggtaatattggtaaaac 13703153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 37303205 - 37303270
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||| ||||    
T  37303205 atttaatatctcatttcatatatttctctctccgcaataaataactaaggataatattggtgaaac 37303270  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 28024374 - 28024422
Alignment:
Q  181 atatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  28024374 atatatttctctctccgcaataaataactaaggataatattggtaaaac 28024422  T

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Target: scaffold0135 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 30792 - 30859
Alignment:
Q  162 taatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||||||| |||| | ||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  30792 taatttaatatttcaattcatatgtttctctctctgcaataaatatctaagggtaatattggtaaaac 30859  T

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Target: scaffold1213 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1213
Description:

Target: scaffold1213; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 79 - 134
Alignment:
Q  174 tcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||| |||||||||||||||| ||||||||||  ||||| |||||| ||||||||    
T  79 tcatttcatatatttctctctccgcaataaataactaaggataatattggtaaaac 134  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 138832 - 138897
Alignment:
Q  164 atttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    ||||||||  ||||| |||||||||||||||| | ||||||||  ||||| |||||| ||||||||    
T  138832 atttaatatctcatttcatatatttctctctctgtaataaataactaaggataatattggtaaaac 138897  T

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Target: scaffold0325 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 461 - 389
Alignment:
Q  157 cttaataatttaatacttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||| |||||||||| |||||| ||||| |||| ||||| ||||||||||| |||  ||||| | ||||||||    
T  461 cttattaatttaatatttcatttcatatgtttccctctctgcaataaatatctaaaagtaattttggtaaaac 389  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 49277 - 49221
Alignment:
Q  173 ttcattccatatatttctctctcagcaataaatatataagggtaatataggtaaaac 229  Q
    |||||| ||||||||||||||||  |||||||||  ||||| |||||| ||||||||    
T  49277 ttcatttcatatatttctctctccacaataaataactaaggataatattggtaaaac 49221  T

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