View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1028_low_9 (Length: 251)
Name: NF1028_low_9
Description: NF1028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1028_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10013231 - 10012991
Alignment:
| Q |
1 |
ttagtaaaacagaagtaaacttgaagagattgcttgcagctgctcctcaccagcaaaaccaggcaaaacttgtacatgtaagtctgaaactaaaccctga |
100 |
Q |
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| T |
10013231 |
ttagtaaaacagaagtaaacttgaagagattgcttgcagctgctcctcaccagcaaaaccaggcaaaacttgtacatgtaagtctgaaactaaaccctga |
10013132 |
T |
|
| Q |
101 |
ctatttattgtagagtaatcagaatcttggcacaatagttgaagtttactctgtgtggttaggatgtcacaggtttgagttatgaattcgacctttttgc |
200 |
Q |
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| T |
10013131 |
ctatttattgtagagtaatcagaatcttggcacaatagttgaagtttactctgtgtggttaggatgtcacaggtttgagttatgaattcgacctttttgc |
10013032 |
T |
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| Q |
201 |
aaatacgcctgcaatatatccaaaatagactcgaccctttg |
241 |
Q |
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| T |
10013031 |
aaatacgcctgcaatatatccaaaatagactcgaccctttg |
10012991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 52652009 - 52652234
Alignment:
| Q |
1 |
ttagtaaaacagaagtaaacttgaagagattgcttgcagctgctcctcaccagcaaaaccaggcaaaacttgtacatgtaagtctgaaactaaaccctga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
52652009 |
ttagtaaaacagaagtaaacttgaagagattgcttgcagctgctcctcagcagcaaaaccaggcaaaacttgtacatgtatgtctgaaagtaaaccctga |
52652108 |
T |
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| Q |
101 |
ctatttattgtagagtaatca-----------------gaatcttggcacaatagttgaagtttactctgtgtggttaggatgtcacag----gtttgag |
179 |
Q |
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| T |
52652109 |
ctatttattgtagagtaatcagtatcgtgtcagaagtggaatcttggcacaatagttgatgtttacgctgtgttgttaggatgtcacagatttgtttgag |
52652208 |
T |
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| Q |
180 |
ttatgaattcgacctttttgcaaata |
205 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
52652209 |
ttatgaattcgatctttttgcaaata |
52652234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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