View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1029-Insertion-1 (Length: 779)
Name: NF1029-Insertion-1
Description: NF1029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1029-Insertion-1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 336
Target Start/End: Original strand, 9712836 - 9713164
Alignment:
| Q |
7 |
aggccatgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaacagtttcttgtctatgtcccaaacctaaatgtgaaatg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9712836 |
aggctatgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaacagtttcttgtctatgtcccaaacctaaatgtgaaatg |
9712935 |
T |
|
| Q |
107 |
ataaattaatgaatgataatgattttaatgaaatatcaacaatgcgattctatgtcccagattcttggtctttgtataacaaatttgaacatattcatat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9712936 |
ataaattaatgaatgataatgattttaatgaaatatcaacaatgtaattctatgtcccagattcttggtctttgtataacaaatttgaacatattcatat |
9713035 |
T |
|
| Q |
207 |
gctatatatacttacctcaatatggttatttgaggtgacatttataaggatgccttgattctggatgaactgtgcatgcatattaaacaccatagtattg |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9713036 |
gc-atatatacttacctcaatatggttatttgaggtgacatttataaggatgccttgattctggatgaactgtgcatgcatattaaacaccatagtattg |
9713134 |
T |
|
| Q |
307 |
ttaattagacaaacatatttgatatcctag |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9713135 |
ttaattagacaaacatatttgatatcctag |
9713164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 548 - 765
Target Start/End: Original strand, 9713376 - 9713594
Alignment:
| Q |
548 |
gttgtgacaatttaattcacatgtgtacatnnnnnnnttgacaatgtaaacagtgaacatacttggtagaaagagctaatatgttgtgaatattgtcaca |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9713376 |
gttgtgacaatttaattcacatgtgtacataaaaaaattgataatgtaaacaatgaacatacttggtagaaagagctaatatgttgtgaatattgtcaca |
9713475 |
T |
|
| Q |
648 |
ggtaaacttggtagcagctgatggtacaccatgatgaaataccaaacgtggatcaacatcactagcttttaatccatttgatgaatttccaccaggctgc |
747 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9713476 |
ggtaaacttggtagcacctgatggcacaccatgatgaaataccaaacgtggatcaacatcactagcttttaatccatttgatgaatttccacccggctgc |
9713575 |
T |
|
| Q |
748 |
-aagaaaatacacagttga |
765 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9713576 |
aaagaaaatacacagttga |
9713594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 392 - 483
Target Start/End: Original strand, 9713220 - 9713311
Alignment:
| Q |
392 |
ataacctgtaaaaacttgctaggcaccagcttattagattcaagtaggacttgagcattatccttaccaaataatttaatcctcccatcact |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9713220 |
ataacctgtaaaaacttgctaggcaccagcttattagattcaagtaggacttgagcattatccttaccaaataatttaatcctcccatcact |
9713311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 9724493 - 9724586
Alignment:
| Q |
13 |
tgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctg----acaacagtttcttgtctatgtcccaaacctaaatgtga |
102 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||||||| |||||| | | |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
9724493 |
tgctgaatgtttgcaagagaagtgatttcttctttaacaatatacaagccagtcacacaacaatttcttgtctatgtcccaaacctatatgtga |
9724586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 602 - 748
Target Start/End: Complemental strand, 31105494 - 31105348
Alignment:
| Q |
602 |
gaacatacttggtagaaagagctaatatgttgtgaatattgtcacaggtaaacttggtagcagctgatggtacaccatgatgaaataccaaacgtggatc |
701 |
Q |
| |
|
|||||||||| ||||||||||| | ||| || ||||| |||| ||| |||||||| | || ||||||||| || ||||||||||| | |||||||| |
|
|
| T |
31105494 |
gaacatactttgtagaaagagcaagtatcttctgaatggagtcataggcaaacttggcaccacctgatggtatcccttgatgaaatacaactcgtggatc |
31105395 |
T |
|
| Q |
702 |
aacatcactagcttttaatccatttgatgaatttccaccaggctgca |
748 |
Q |
| |
|
|||||||| || |||||||| | | |||||||||||||||||||| |
|
|
| T |
31105394 |
tacatcactggcctttaatccttctattgaatttccaccaggctgca |
31105348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 31106298 - 31106202
Alignment:
| Q |
5 |
acaggccatgctgaatgactgcaaaagatgtgatttcttctttaacaatgtacaagtctgacaacagtttcttgtctatgtcccaaacctaaatgtg |
101 |
Q |
| |
|
|||||| ||| ||||||||||||||| | ||||||||||||||| ||| || | || ||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
31106298 |
acaggctatgttgaatgactgcaaaacaagtgatttcttctttagcaacatatacatcagacaatattttcttctctatgtcccaaacctaaatgtg |
31106202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 31106101 - 31106039
Alignment:
| Q |
216 |
acttacctcaatatggttatttgaggtgacatttataaggatgccttgattctggatgaactg |
278 |
Q |
| |
|
|||| |||||||||| ||||| || |||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
31106101 |
acttgcctcaatatgattattggaagtgacatttaaaaggatgccttggttctggatgaactg |
31106039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University