View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1029-Insertion-10 (Length: 59)

Name: NF1029-Insertion-10
Description: NF1029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1029-Insertion-10
NF1029-Insertion-10
[»] scaffold0184 (2 HSPs)
scaffold0184 (14-59)||(7017-7062)
scaffold0184 (15-59)||(7284-7328)
[»] chr4 (14 HSPs)
chr4 (7-59)||(23254708-23254760)
chr4 (7-59)||(42305897-42305949)
chr4 (13-59)||(41316229-41316275)
chr4 (14-59)||(41315898-41315943)
chr4 (16-59)||(15874229-15874272)
chr4 (15-59)||(20878988-20879032)
chr4 (15-59)||(23254377-23254421)
chr4 (15-59)||(38485199-38485243)
chr4 (8-59)||(20878686-20878737)
chr4 (13-59)||(38484459-38484505)
chr4 (13-59)||(42306235-42306281)
chr4 (13-59)||(55893212-55893258)
chr4 (14-59)||(15874559-15874604)
chr4 (14-59)||(55893502-55893547)
[»] chr3 (12 HSPs)
chr3 (12-59)||(33794431-33794478)
chr3 (15-59)||(40560790-40560834)
chr3 (13-59)||(2439768-2439814)
chr3 (14-59)||(5048335-5048380)
chr3 (14-59)||(20124654-20124699)
chr3 (12-59)||(14783732-14783779)
chr3 (13-59)||(5048002-5048048)
chr3 (13-59)||(14784052-14784098)
chr3 (14-59)||(31724679-31724724)
chr3 (14-57)||(31724352-31724395)
chr3 (15-47)||(33794774-33794806)
chr3 (12-47)||(40560471-40560506)
[»] chr5 (5 HSPs)
chr5 (13-59)||(39760422-39760468)
chr5 (10-59)||(31155673-31155722)
chr5 (12-59)||(31156224-31156271)
chr5 (15-59)||(39761645-39761689)
chr5 (14-57)||(31155369-31155412)
[»] chr1 (10 HSPs)
chr1 (13-59)||(7710033-7710079)
chr1 (14-59)||(34492560-34492605)
chr1 (7-59)||(52331399-52331451)
chr1 (13-59)||(52331738-52331784)
chr1 (15-59)||(34492237-34492281)
chr1 (16-59)||(13618615-13618658)
chr1 (15-59)||(7709700-7709744)
chr1 (16-59)||(13618432-13618475)
chr1 (14-59)||(13618255-13618300)
chr1 (15-59)||(37646988-37647032)
[»] chr8 (4 HSPs)
chr8 (14-59)||(3068773-3068818)
chr8 (14-59)||(3069105-3069150)
chr8 (13-59)||(3305950-3305996)
chr8 (14-59)||(3305618-3305663)
[»] chr2 (6 HSPs)
chr2 (14-59)||(12414168-12414213)
chr2 (14-59)||(12426228-12426273)
chr2 (14-59)||(4732014-4732059)
chr2 (15-58)||(4731715-4731758)
chr2 (13-59)||(12413836-12413882)
chr2 (13-59)||(12425896-12425942)
[»] chr6 (11 HSPs)
chr6 (12-59)||(16368931-16368978)
chr6 (9-59)||(29847010-29847060)
chr6 (14-59)||(33746711-33746756)
chr6 (11-59)||(6851245-6851293)
chr6 (13-59)||(33746982-33747028)
chr6 (13-59)||(11246382-11246428)
chr6 (14-48)||(16368640-16368674)
chr6 (13-47)||(16766287-16766321)
chr6 (17-59)||(20582638-20582680)
chr6 (14-48)||(29846788-29846822)
chr6 (15-56)||(16766594-16766635)
[»] chr7 (9 HSPs)
chr7 (14-59)||(37873416-37873461)
chr7 (15-59)||(24825891-24825935)
chr7 (9-59)||(37879181-37879231)
chr7 (14-59)||(24825558-24825603)
chr7 (14-59)||(32793114-32793159)
chr7 (15-59)||(32792783-32792827)
chr7 (13-59)||(9402558-9402604)
chr7 (13-59)||(11324051-11324097)
chr7 (14-59)||(11324379-11324424)
[»] scaffold1408 (1 HSPs)
scaffold1408 (16-59)||(1745-1788)
[»] scaffold0428 (2 HSPs)
scaffold0428 (16-59)||(7491-7534)
scaffold0428 (16-59)||(7806-7849)
[»] scaffold0291 (2 HSPs)
scaffold0291 (14-57)||(10953-10996)
scaffold0291 (13-59)||(11386-11432)
[»] scaffold0032 (1 HSPs)
scaffold0032 (18-56)||(33250-33288)


Alignment Details
Target: scaffold0184 (Bit Score: 46; Significance: 4e-18; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 46; E-Value: 4e-18
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 7017 - 7062
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7017 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 7062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 7328 - 7284
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||| | |||| ||||||||||||| ||||||||||    
T  7328 ggcttaaatattggattcgtccctgcaaatatggcccgtttaagt 7284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 23254760 - 23254708
Alignment:
Q  7 aaaatataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23254760 aaaaaataggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 23254708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 42305897 - 42305949
Alignment:
Q  7 aaaatataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  42305897 aaaataaaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 42305949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 41316275 - 41316229
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||    
T  41316275 taggcttaaatattgcactcgtccctgcaaatatggttcgtttaagt 41316229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 41315898 - 41315943
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  41315898 aggcttaaatattgcattcgtccctgcaaatatggtccgtttaagt 41315943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 15874229 - 15874272
Alignment:
Q  16 gcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  15874229 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 15874272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 20879032 - 20878988
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||    
T  20879032 ggcttaaatattacactcgtccctgcaaatatggcccgtttaagt 20878988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 23254377 - 23254421
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||    
T  23254377 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagt 23254421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 38485243 - 38485199
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||    
T  38485243 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagt 38485199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 20878686 - 20878737
Alignment:
Q  8 aaatataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||| ||| ||||| | ||||||||||||| ||||||||||    
T  20878686 aaatataggcttaaacattccactcatccctgcaaatatggcccgtttaagt 20878737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 38484459 - 38484505
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||||||    
T  38484459 taggcttaaatattgcactcgtctctgtaaatatggcccgtttaagt 38484505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 42306281 - 42306235
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||| |||||| ||| ||||||||| ||||||||||    
T  42306281 taggcttaaatattgaactcgtccctccaaatatggcccgtttaagt 42306235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 55893212 - 55893258
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||| |||  |||||||||||| ||||||||||    
T  55893212 taggcttaaatattgcacccgtctctgcaaatatggcccgtttaagt 55893258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 15874604 - 15874559
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||| |||||||||||| ||||||||||||  ||||||||||    
T  15874604 aggcttaagtattgcactcgtccctgcaaatatgccccgtttaagt 15874559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 55893547 - 55893502
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| |||| ||||||||  |||||||||    
T  55893547 aggcttaaatattgcactcgtccctgtaaatatggctcgtttaagt 55893502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-17
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 33794431 - 33794478
Alignment:
Q  12 ataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33794431 ataggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 33794478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 40560834 - 40560790
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  40560834 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 40560790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 2439768 - 2439814
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  2439768 taggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 2439814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 5048380 - 5048335
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  5048380 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 5048335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 20124654 - 20124699
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  20124654 aggcttaaatattgcactcgtccctgtaaatatggtccgtttaagt 20124699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 14783732 - 14783779
Alignment:
Q  12 ataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||| || ||||||||||||| ||||||||||    
T  14783732 ataggcttaaatattgcacttgtccctgcaaatatggcccgtttaagt 14783779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 5048002 - 5048048
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||| | || |||||||||||||||||||    
T  5048002 taggcttaaatattgcactcgtccttgtaaatatggtccgtttaagt 5048048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 14784098 - 14784052
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||    
T  14784098 taggcttaaatattgcactcgtccctgcaaatatgacccgtttaagt 14784052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 31724724 - 31724679
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| | ||||||||||| ||||||||||    
T  31724724 aggcttaaatattgcactcgtccttgcaaatatggcccgtttaagt 31724679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 31724352 - 31724395
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaa 57  Q
    ||||||||||||||||||||| | ||||||||||| ||||||||    
T  31724352 aggcttaaatattgcactcgtccatgcaaatatggcccgtttaa 31724395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 33794806 - 33794774
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatg 47  Q
    |||||||||||||||||||| ||||||||||||    
T  33794806 ggcttaaatattgcactcgtccctgcaaatatg 33794774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 40560471 - 40560506
Alignment:
Q  12 ataggcttaaatattgcactcgttcctgcaaatatg 47  Q
    ||||||||||||||||||| ||| ||||||||||||    
T  40560471 ataggcttaaatattgcacccgtccctgcaaatatg 40560506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 39760422 - 39760468
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39760422 taggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 39760468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 31155722 - 31155673
Alignment:
Q  10 atataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  31155722 atataggcttaaatattgcactcgtccctgcaaatatgacccgtttaagt 31155673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 31156271 - 31156224
Alignment:
Q  12 ataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  31156271 ataggcttaaatattgcattcgtccctacaaatatggtccgtttaagt 31156224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 39761689 - 39761645
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||| || |||||||||||||  |||||||||    
T  39761689 ggcttaaatattgcacttgtccctgcaaatatggcacgtttaagt 39761645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 31155369 - 31155412
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaa 57  Q
    |||||||||||||| |||||| | ||||||||||| ||||||||    
T  31155369 aggcttaaatattgtactcgtccatgcaaatatggcccgtttaa 31155412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 3e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 7710079 - 7710033
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  7710079 taggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 7710033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 34492605 - 34492560
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  34492605 aggcttaaatattgcactcgttcctgcaaatatggtctgtttaagt 34492560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 52331399 - 52331451
Alignment:
Q  7 aaaatataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  52331399 aaaataaaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 52331451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 52331784 - 52331738
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  52331784 taggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 52331738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 34492237 - 34492281
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  34492237 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 34492281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 13618658 - 13618615
Alignment:
Q  16 gcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  13618658 gcttaaatattgcattcgtccctgcaaatatggtccgtttaagt 13618615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 7709700 - 7709744
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||    
T  7709700 ggcttaaatattgaactcgtccctgcaaatatggcccgtttaagt 7709744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 13618475 - 13618432
Alignment:
Q  16 gcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||    
T  13618475 gcttaaatattgcattcgtccctgcaaatatggcccgtttaagt 13618432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 13618255 - 13618300
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||| | ||||||||||||  ||||||||||    
T  13618255 aggcttaaatattgcactcttccctgcaaatatgacccgtttaagt 13618300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 37647032 - 37646988
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||| ||||| ||||||||||||  |||||||||    
T  37647032 ggcttaaatattgcattcgtttctgcaaatatggctcgtttaagt 37646988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 3068773 - 3068818
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3068773 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 3068818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 3069150 - 3069105
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3069150 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 3069105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 3305996 - 3305950
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  3305996 taggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 3305950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 3305618 - 3305663
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  3305618 aggcttaaatattgaactcgtccctgcaaatatggtccgtttaagt 3305663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 12414213 - 12414168
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  12414213 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 12414168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 12426273 - 12426228
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  12426273 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 12426228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 4732059 - 4732014
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||    
T  4732059 aggcttaaatattgcactcatccctgcaaatatggtccgtttaagt 4732014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 4731715 - 4731758
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaag 58  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  4731715 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaag 4731758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 12413836 - 12413882
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||||    
T  12413836 taggcttaaatattgcacttgtccctgcaaatatggcccgtttaagt 12413882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 12425896 - 12425942
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||||    
T  12425896 taggcttaaatattgcacttgtccctgcaaatatggcccgtttaagt 12425942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 16368978 - 16368931
Alignment:
Q  12 ataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  16368978 ataggcttaaatattgcactcgtccctgcaaatatgatccgtttaagt 16368931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 29847060 - 29847010
Alignment:
Q  9 aatataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  29847060 aataaaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 29847010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 33746711 - 33746756
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  33746711 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 33746756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 6851245 - 6851293
Alignment:
Q  11 tataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||||| | |||||||||| |||||||||||    
T  6851245 tataggcttaaatattgcactcgtccatgcaaatatgatccgtttaagt 6851293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 33747028 - 33746982
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  33747028 taggcttaaatattgcacccgtccctgcaaatatggcccgtttaagt 33746982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 11246428 - 11246382
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||| | |||||||||||| || ||||||||    
T  11246428 taggcttaaatattgcactcatccctgcaaatatgatctgtttaagt 11246382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 16368640 - 16368674
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatgg 48  Q
    ||||||||||||||||||||| |||||||||||||    
T  16368640 aggcttaaatattgcactcgtccctgcaaatatgg 16368674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 16766287 - 16766321
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatg 47  Q
    |||||||||||||||||||||| ||||||||||||    
T  16766287 taggcttaaatattgcactcgtccctgcaaatatg 16766321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 20582638 - 20582680
Alignment:
Q  17 cttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||    
T  20582638 cttaaatattgcactcgtccctacaaatatagtccgtttaagt 20582680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 29846788 - 29846822
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatgg 48  Q
    ||||||||||||||||||||| |||||||||||||    
T  29846788 aggcttaaatattgcactcgtccctgcaaatatgg 29846822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 16766635 - 16766594
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgttta 56  Q
    ||||||||||||||| |||| ||||||||||||| |||||||    
T  16766635 ggcttaaatattgcaatcgtccctgcaaatatggcccgttta 16766594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 37873416 - 37873461
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  37873416 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 37873461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 24825935 - 24825891
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  24825935 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 24825891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 37879231 - 37879181
Alignment:
Q  9 aatataggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||| |||||| ||||||||||||  ||||||||||    
T  37879231 aatataggcttaaatattgtactcgtccctgcaaatatgacccgtttaagt 37879181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 24825558 - 24825603
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||    
T  24825558 aggcttaaatattgcactcgtccctgcaaatatggctcgtttaagt 24825603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 32793159 - 32793114
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||    
T  32793159 aggcttaaatattgcactcgtccctgcaaatatagcccgtttaagt 32793114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 32792783 - 32792827
Alignment:
Q  15 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||    
T  32792783 ggcttaaatattgcactcgtccttgcaaatatggcccgtttaagt 32792827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 9402558 - 9402604
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||| ||||||||||||||||| ||||||||||||  ||||||||||    
T  9402558 taggtttaaatattgcactcgtccctgcaaatatgacccgtttaagt 9402604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 11324051 - 11324097
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||| ||||||||||||||||| ||||||||||||| ||| ||||||    
T  11324051 taggtttaaatattgcactcgtccctgcaaatatggcccgattaagt 11324097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 11324424 - 11324379
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||| |||| |||||||||||||  |||||||||    
T  11324424 aggcttaaatattgcattcgtccctgcaaatatggctcgtttaagt 11324379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 36; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 1745 - 1788
Alignment:
Q  16 gcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  1745 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 1788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 36; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 7491 - 7534
Alignment:
Q  16 gcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  7491 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagt 7534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 7849 - 7806
Alignment:
Q  16 gcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    ||||||||||||||||||| |||||||||||||  |||||||||    
T  7849 gcttaaatattgcactcgtccctgcaaatatggcacgtttaagt 7806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 36; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 10953 - 10996
Alignment:
Q  14 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaa 57  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  10953 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaa 10996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 11432 - 11386
Alignment:
Q  13 taggcttaaatattgcactcgttcctgcaaatatggtccgtttaagt 59  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||    
T  11432 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagt 11386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 33288 - 33250
Alignment:
Q  18 ttaaatattgcactcgttcctgcaaatatggtccgttta 56  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  33288 ttaaatattgcactcgtccctgcaaatatggtccgttta 33250  T

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