View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1029-Insertion-2 (Length: 763)
Name: NF1029-Insertion-2
Description: NF1029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1029-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 7 - 686
Target Start/End: Original strand, 653760 - 654439
Alignment:
| Q |
7 |
agctaagttatgagcaaggttagcaccgttgacatcaccacctatgtaaactttgttgaaatcaccagaatcttgtaaccattgnnnnnnnnctatgcta |
106 |
Q |
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| T |
653760 |
agctaagttatgagcaaggttagcaccgttgacatcaccacctatgtaaactttgttgaaatcaccataatcttgtaaccattgttctttttctatgcta |
653859 |
T |
|
| Q |
107 |
ctgttggggtcattgcttgtgtgagaagcaacccattggagagaagtccaaccatcttcatacgctgcaggaagaggatgttgtggaaggagtctgtaat |
206 |
Q |
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| T |
653860 |
ctgttggggtcattgcttgtgtgagaagcaacccattggagagaagtccaaccatcttcatacgctgcaggaagaggatgttgtggaagaagtctgtaat |
653959 |
T |
|
| Q |
207 |
ctatagaaacagctattatatttgattcagaaactaagaggttgagatatcggtggcagaaaaaggagaaaggggattcaacacaaaaagcaccagcatg |
306 |
Q |
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| T |
653960 |
ctatagaaacagctattatatttgattcagaaaccaagaggttgagatatcggtggcagaaaaaggagaaaggggattcaacacaaaaagcaccagcatg |
654059 |
T |
|
| Q |
307 |
aaaatagagtaagatgggaaatttatgattgtggtgagattttggaaggaaaatgcgagcggaaagggaagggttattgttggagataacaatatctttg |
406 |
Q |
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| T |
654060 |
aaaatagagtaagatgggaaatttatgattgtggtgagattttggaaggaaaatgcgagcggaaagggaagggttattgttggagataacgatatctttg |
654159 |
T |
|
| Q |
407 |
gatgagacaccggtttgagggtcttgaagggaaggtgggactattgaagagctcatgagacgttctatggtgccatctttgtagacacggataaggggta |
506 |
Q |
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| T |
654160 |
gatgagacaccggtttgagggtcttgaagggaaggtgggactattgaagaactcattagacgttctatggtgccatctttgtagacacggataaggggta |
654259 |
T |
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| Q |
507 |
gaagctctttttctatctctttgttggtgttggaacaagaattcattgacattttggtggaataaacaaagtgagtgagaaacatgggaaggagggtatg |
606 |
Q |
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| T |
654260 |
gaagctctttttctatctctttgttggtgttggaacaagaattcattgacattttggtggaataaacaaagtgagtgagaaacatgggaaggagggtatg |
654359 |
T |
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| Q |
607 |
tactaatatagtcaaagataagattattagataaggttccatctaaatggttggtgaagaatgtgaagatcaatattgac |
686 |
Q |
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| T |
654360 |
tactaatatagtcaaagataagattattagataaggttccatctaaatggttggtgaagaatgtgaagatcaatattgac |
654439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 687 - 763
Target Start/End: Original strand, 655053 - 655127
Alignment:
| Q |
687 |
cgacggcagaagctaagaagcacacatatagaatatcatgacaaaaatgggaaactgaccaagtcaattgtgataaa |
763 |
Q |
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| T |
655053 |
cgacggcagaagctaagaagcacacatatagaatatcatgacaaaaat-ggaaactgaccaagtcaa-tgtgataaa |
655127 |
T |
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